BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918823
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01440.1 | Symbols: | Protein of unknown function (DUF3133)... 2918 0.0
> AT1G01440.1 | Symbols: | Protein of unknown function (DUF3133)
| chr1:159856-162572 REVERSE LENGTH=2221
Length=2221
Score = 2918 bits (1580), Expect = 0.0
Identities = 1899/2046 (93%), Gaps = 50/2046 (2%)
Strand=Plus/Plus
Query 14 TTTTTCTTTTTCCGATGAGGACAAGCGGTGACGTTTATGGAGCAGATGCTGGTTCTTCAA 73
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 135 TTTTT-TTTTTCCGATGAGGACAAGCGGTGACGTTTATGGAGCAGATACTGGTTCCTCAA 193
Query 74 GAAGTGATGAAGATAGAGGGTTTAAGGAGGATCTCAATGAA-CC-C-GCTAGCCCGATGA 130
||||||||||||| ||||| ||||||||||||||||||||| || | ||||||||||||
Sbjct 194 GAAGTGATGAAGACAGAGGCTTTAAGGAGGATCTCAATGAATCCGCTACTAGCCCGATGA 253
Query 131 GAAATCGCC-AGGAAGATTCGAATTCACGACCTGGGTCTCAGAGATTCGTCAAGAGCTTG 189
||||||||| | || |||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 254 GAAATCGCCTA-GACGATTCGAATTCACGACCTGGTTCTCAGAGATTCGTCAAGAGCTCG 312
Query 190 AGAAAAGAAGAAGAGACTGATTCAGATTCTTCTTCTTCTAAG---------ACCAGAAAC 240
||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 313 AGAAAGGAGGAAGAGACTGATTCAGATTCTTCTTCTTCTAAGAACACAACCACCAGAAAC 372
Query 241 AACCCAATTCAGTACACAGATAAACAACAAGCCGAGCTTTTGAGAAAGCTTGATTCTATT 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 AACCCAATTCAGTACACTGATAAACAACAAGCCGAGCTTTTGAGAAAGCTTGATTCTATT 432
Query 301 AAAGATCATCTTCTCCGTGGTGGAGG---TAATGCTAATGTGGCTGATCAGCCACCACCA 357
|||||||||||||||||||||||||| |||||||| ||| | ||||||| |||
Sbjct 433 AAAGATCATCTTCTCCGTGGTGGAGGTAATAATGCTACTGTTGTTGATCAG------CCA 486
Query 358 CCAATGGGTTTCCATG---GTCATGG---TCCTCCTTCTTATTACAATCCATACCCTGAG 411
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 487 CCAATGGGTTTCCATGCCCATCATGGACCTCCTCCTTCTTATTACAATCCATACCCTGAG 546
Query 412 CCGTTTCCTTATGGAATGTATCCTACCGCGAGTAACCCGA-CTCATGTTCCAGCTTATAG 470
|| |||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 547 CCATTTCCTTATGGAATGTATCCTACCGCGAGTAA-CCAACCTCATGTTCCAGCTTATAG 605
Query 471 AGACCCTTATGGATTCCCAGTGCATA-GAGTACCTCAAAACTTTTATCAAGGACCAGGTC 529
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 606 AGACCCTTATGGATTCCCAGTGCATAGGA-TACCTCAAAACTTTTATCAAGGACCAAGTC 664
Query 530 ATTACCCGAATCAGATGCCGCCTCGTCCTCCATATCCTCAAGGACAGTATGTAGACATTG 589
||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 665 ATTACCCTAATCAGATGCCGCCTCGTCCACCCTATCCTCAAGGACAGTATGTAGACATTG 724
Query 590 GTTCTGATATACTTGACACCCAGTTACAGGACCCTAGATTCTTTCCGGGTACGCCGAGTA 649
| |||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 725 GCTCTGATATACTTGAGTCACAGTTACAGGACCCTAGATTCTTTCCGGGTACGCCAAGTA 784
Query 650 GGTACGGTGATGTCCCATTTAGCCCGGCTAAGCACCACGGTGAGAAAGTTGGACCCTTTA 709
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 785 GGTATGGTGATGTCCCATTTAGCCCGGCTTTGCACCACGGTGAGAAAGTTGGACCCTTTA 844
Query 710 GTCCACATGGTGGTGTTCAAGGTCATCACACGAGGTGGCCTAGTGATATTGATTCTGAAA 769
||||||||||| | | | || ||||||||||||||||||||| |||||||||||||
Sbjct 845 GTCCACATGGT-G-G-T----GT--TCACACGAGGTGGCCTAGTGAAATTGATTCTGAAA 895
Query 770 TGGGTGGTGCTTTTGCTCGTGGGTATGTTCAAAAAGCTGTTTCGGATACTGATTCACGTC 829
|||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 896 TGGGTGGTGCTTTTGCTCGTGGGTATGTTCAACAAGCTGTGTCTGATACTGATTCACGTC 955
Query 830 GTTGCCATCCTCTATCAGGCGGTGCGCCTTTTATTGCTTGTCACAATTGCTTTGAGCTGC 889
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 956 GTTGCCATCCTCTAGCAGGCGGTGCGCCTTTTATTGCTTGTCACAGTTGCTTTGAGCTGC 1015
Query 890 TCTATGTGCCTAAGAAGAAGCTTCTTGGTCAGGAAAGGCAACAAAAGCTGCAATGTGGTG 949
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1016 TATATGTGCCTAAGAAGAAGCTTCTTGGTCAGGAAAGGCAACAAAAGATGCAATGTGGTG 1075
Query 950 CTTGTTCTGAGGTTATCA-GTTTCACAGTTGTTGATAGGAAGCTTGTTTTCTCCTCTTCT 1008
|||||||||||||||||| | |||| ||||||||||| ||||||||||||||| ||||||
Sbjct 1076 CTTGTTCTGAGGTTATCACG-TTCAGAGTTGTTGATAAGAAGCTTGTTTTCTCATCTTCT 1134
Query 1009 GCCCTGGGGGAAACTACGAACCGGGTTTCTGTAGAGGTTGAAGATAGAAGCGCACCAAGC 1068
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1135 GCCCTGGGGGAAACTACGAACCGGGTTTCTGTAGAGGTTGAAGATAGAAGCTCACCAATC 1194
Query 1069 GCTGTGGTAGATGATTATCCACTTAAGGATGAGGAAATAAGAATACACCAGGAAACGAAA 1128
|||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||
Sbjct 1195 CCTGTGGTAGATGATTATCCACTCAATGATGAAGAACCAAGAATACACCAGGAAACGAAA 1254
Query 1129 ATTGTACATGCTGTATCGCCTAGTGAACACTCAGACGACGAAGACAGGTCAAGCATTTCT 1188
||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 1255 ATTGTCCATGCTGTATCGCCTAGTGATCACTCAAACGATGAAGACAGGTCAAGCATTTCT 1314
Query 1189 AGTAG-GCCGCAGAAACAGGTCGTCAAGTCTGTTCGCAGCAGAGCCCAAGGCGCAAAGGT 1247
||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1315 AGT-GAGCCGCGGAAACAGGTCGTCAAGTCTGTTCGCAGCAGAGCCCAAGGCGCGAAGG- 1372
Query 1248 TTctcctcctcctcctcctcctGAAAAGTCCAATCTTCTTGAGCTCTTTGAGTATTCTAA 1307
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1373 -T-TCCTCCTCCTCCTCCTCCGGAAAAGTCCAATCTTCTTGAGCTCTTTGAGTATTCTAA 1430
Query 1308 TGTAAACCGAGCTGCAATCACTTACGGAATGGCGCAGCTAGGGTACAATAAGCAAGAATC 1367
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1431 TGTAAACCGAGCTGCAATCACTTACGGAATGGCGCAGTTAGGGTACTATAAGCAAGAATC 1490
Query 1368 CTACAGGAAACAAGACTCGCTAAAATCAGAATCAGTAGCTACTGAGACAGATGTTTCTTA 1427
|||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1491 ATACACGAAACAAGACTCCCTGAAATCAGAATCAGTAGCTACTGAGACAGATGTTTCTTA 1550
Query 1428 TAATGAATACTATAATAACACTGAGGAGTCTGAAGATTCAAGGATCTCAAAAGCCAACAA 1487
|||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1551 TAATGAGTACTATACTAACACCGAGGAGTCTGAAGATTCAAGGATCTCAAAAGCCAGCAA 1610
Query 1488 AGAAGAGAGAAGACCAAGAAACCGAAAGCAGAGTAGTGAGTACAGTTTCCCAGAGGTCAC 1547
||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1611 AGAAGGGAGACGACCAAGAAACCGAAAGCAGAGTAGTGAGCACAGTTTCGCAGAGGTCAC 1670
Query 1548 AAATAAAATCGGCTCTAACGACCAAAACGACGAGCAGTTAGAGGTTTGGGTGAACGGGCA 1607
|||||| ||| | ||||||||||||||| |||||||| |||||||||||||||| ||| |
Sbjct 1671 AAATAATATCAGTTCTAACGACCAAAACAACGAGCAGCTAGAGGTTTGGGTGAATGGGTA 1730
Query 1608 TCTGATACCGGAAGATCTGGTTATCAGCGCTGAGAAACAAGCTGGACCAGTTCAAGCTGG 1667
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1731 TCTGATACCAGAAGATCTGGTTATTAGCGCTGAGAAACAAGCTGGGCCAGTTCAAGCTGG 1790
Query 1668 CAAATACTGGTATGATTACCGTGCTGGGTTCTGGGGAGTGATGGGAAACCCGTGTCTCGG 1727
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1791 CAAATACTGGTATGATTACCGTGCTGGATTCTGGGGAGTGATGGGAAACCCTTGTCTCGG 1850
Query 1728 TATAATACCACCATTTATCGAAGAGTTTAGTCGCCCAATGCCGGATAACTGCGGTGCAGG 1787
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1851 TATAATACCACCATTTATAGAGGAGTTTAGTCGACCAATGCCGGATAACTGCGGTGCAGG 1910
Query 1788 AAACACGAGCGTGTTTGTAAACGGAAGAGAGCTTCACGAGAGAGATCTAGAGTTACTTTC 1847
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1911 AAACACGAGTGTGTTTGTAAACGGAAGAGAGCTTCACGAGAGAGACCTAGAGTTACTATC 1970
Query 1848 AAGAAGAGGTCTTCCTGGAGGCAAGAATCGTTCTTACATCATTGATATATCAGGAAGAGT 1907
||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1971 AAGTAGAGGTCTTCCTCGAGGCAAGAACCGTTCTTACATCATTGATATAGCAGGAAGAGT 2030
Query 1908 TCTTGATGGAGACTCTGGTGAAGAACTTAAGAGCCTTGGCAGATTAGCTCCAACGGTTGA 1967
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2031 TCTTGATGGAGACTCTGGTGAAGAACTTAAGAGTCTTGGCAGATTAGCTCCAACGGTTGA 2090
Query 1968 CAAGGTTAAGCATGGATTTGGCATGAGAGTTCCAAGATCATTAGTTTCATGAAGCTTCAT 2027
|||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||| |
Sbjct 2091 CAAGGTGAAGCATGGATTTGGCATGAGGGTTCCAAGATCATTAGTCTCGTGAAGCTTCGT 2150
Query 2028 CAGCTT 2033
||||||
Sbjct 2151 CAGCTT 2156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101053697085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5