BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918832
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01355.1 | Symbols: | Putative endonuclease or glycosyl hyd... 599 1e-170
AT5G35640.1 | Symbols: | Putative endonuclease or glycosyl hyd... 385 3e-106
> AT1G01355.1 | Symbols: | Putative endonuclease or glycosyl hydrolase
| chr1:138513-139568 FORWARD LENGTH=687
Length=687
Score = 599 bits (324), Expect = 1e-170
Identities = 405/442 (92%), Gaps = 13/442 (3%)
Strand=Plus/Plus
Query 88 GGTGTCCGGTTCCCAG-TGACGTTGATGTTCGTAGGGTGGGTCCGTGTATAAAACGGGCG 146
||||||||||| || | ||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 29 GGTGTCCGGTT-CCGGCTGACGTTGATGTTCGCAGGGTCGGTCCGTGTATAAAACGGGCT 87
Query 147 TTGGAGAAATTAGGCTACTCTGGTCCTCTCACCATCACTGCCGTTGGCATACTAACAGAC 206
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 88 TTGGAGAAATTAGGCTACTCTGGTCCTCTCACCATCACTGCCGTTGGGATACTAACAGAC 147
Query 207 GTCCCGCATGACTTCCTCAGACAAGTCCATTCCTCTGGAATCGCTCTTCATCACGTTCCC 266
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 GTCCCTCATGACTTCCTCAGACAAGTCCATTCCTCTGGAATCGCTCTTCATCACGTTCCC 207
Query 267 ACCGTTTCTGAAACAGATATCTCAGGCCTTGGGTGGGCTGTGCTTAAGTGGACCTGGTAT 326
|||||||| ||||||| | ||||||| |||||||||||||| |||||||||||||||||
Sbjct 208 ACCGTTTCCGAAACAGCTCTCTCAGGGATTGGGTGGGCTGTGGTTAAGTGGACCTGGTAT 267
Query 327 AATCAACCTCCGGCTAATTTAATGCTCATATCGTATGAGCCA-ATCTTCTTGGAC-ACTC 384
||||||||||||||||||||||||||||||||||| |||| | |||| |||| || ||||
Sbjct 268 AATCAACCTCCGGCTAATTTAATGCTCATATCGTACGAGC-ATATCTACTTG-ACCACTC 325
Query 385 TTGGCATGCTAGGTGGGATCGGATACAACATTGTTCTGTCTATACTTCCAGATGATCTTG 444
||| |||||||||| ||||||||||||||| ||||| |||||| ||||||||||||| |
Sbjct 326 TTGACATGCTAGGTAGGATCGGATACAACACTGTTCGGTCTATTCTTCCAGATGATCCTC 385
Query 445 AACAAGCCGCATCCTCCGGCTCCGCTTCCTCTTCTGCAGGGTGTTTCCTCTGGGAAAGCT 504
|||||||||||||||||| |||| | | | | || |||||| |||||||||||||||||
Sbjct 386 AACAAGCCGCATCCTCCGCCTCC-C--C-T-T-CTACAGGGTCTTTCCTCTGGGAAAGCT 439
Query 505 TACTGGCAAGCTTTACCAGCAG 526
||||||||||||| ||||||||
Sbjct 440 TACTGGCAAGCTT-ACCAGCAG 460
> AT5G35640.1 | Symbols: | Putative endonuclease or glycosyl hydrolase
| chr5:13834633-13835606 FORWARD LENGTH=579
Length=579
Score = 385 bits (208), Expect = 3e-106
Identities = 381/462 (82%), Gaps = 21/462 (5%)
Strand=Plus/Plus
Query 63 ACACGCGTGTGGTGGGACATCAACAGGTGTCCGGTTCCCAGTGACGTTGATGTTCGTAGG 122
||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||| ||
Sbjct 100 ACAAGCGTCTGGTGGGACATCAACAGGTGTCCGCTTCCCAATGACGTTGATGTTCGTCGG 159
Query 123 GTGGGTCCGTGTATAAAACGGGCGTTGGAGAAATTAGGCTACTCTGGTCCTCTCACCATC 182
||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||| | |
Sbjct 160 GTGAGTCCGTTTATAAAACGGGCGTTGGAGAAATTAGGCTACACTGGTGCTCTCACAACC 219
Query 183 ACTGCCGTTGGCATACTAACAGACGTCCCGCATGACTTCCTCAGACAAGTCCATTCCTCT 242
|||||| ||||||||||||||||||| || ||||||||||||| ||||||| |||| |||
Sbjct 220 ACTGCCATTGGCATACTAACAGACGTTCCTCATGACTTCCTCACACAAGTCTATTCTTCT 279
Query 243 GGAATCGCTCTTCATCACGTTCCCACC-GTTTCTGAAACAGATATCTCAGGCCTTGGGTG 301
||||||||| |||| ||| | ||| | ||||||||||||||||||| | ||| | |
Sbjct 280 GGAATCGCTATTCACCACAT-CCCTCTTGTTTCTGAAACAGATATCTTTGAACTTAGTTC 338
Query 302 GGCTGTGC-TTAAGTGGACCTGGTATAATCAACCTCCGGCTAATTTAATGCTCATATCGT 360
|||||| | || | ||||| ||| | |||| ||||||| ||||| |||||||||||||
Sbjct 339 GGCTGT-CATTTATTGGACTTGGGACAATCTACCTCCGTCTAATATAATGCTCATATCAA 397
Query 361 ATGAGCCAATCTTCTTGGACACT-CTTGGCATGCTAGGTGGGAT-CGGATACAACATTGT 418
||||| |||||||| | | || |||| || |||| |||| || |||||||||| | ||
Sbjct 398 ATGAGTTAATCTTCTCG-AGTCTTCTTGACAAGCTATGTGG-ATTCGGATACAACGTCGT 455
Query 419 TCTGTCTATACTTCCAGATGATCTTGAACAAGCCGCATCCTCCGGCTCCGCTTCCTCTTC 478
|| ||| ||| |||||||||||| | | |||||||| | ||||||||| ||||
Sbjct 456 TCGGTCAATATTTCCAGATGATCCTCAGCAAGCCGC-------G--TCCGCTTCCACTTC 506
Query 479 TGCAGGGT-GT--TTCCTCTGGGAAAGCTTACTGGCAAGCTT 517
||||| || || |||||||||||||||||||||||||
Sbjct 507 C-CAGGGCCGTACTTATTCTGGGAAAGCTTACTGGCAAGCTT 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27277141821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5