BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918833
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01350.1 | Symbols: | Zinc finger (CCCH-type/C3HC4-type RIN... 1607 0.0
AT5G06420.1 | Symbols: | Zinc finger (CCCH-type/C3HC4-type RIN... 1482 0.0
> AT1G01350.1 | Symbols: | Zinc finger (CCCH-type/C3HC4-type RING
finger) family protein | chr1:136124-138162 FORWARD LENGTH=1400
Length=1400
Score = 1607 bits (870), Expect = 0.0
Identities = 992/1052 (94%), Gaps = 3/1052 (0%)
Strand=Plus/Plus
Query 26 ATGTCAGATTCTGGTGAACCTAAACCGTCTCAGCAAGATGAATCTCAACCTCAACCTGCT 85
||||||||||||||||| |||||||| ||||||||||| ||| ||| |||||||||||||
Sbjct 177 ATGTCAGATTCTGGTGAGCCTAAACCTTCTCAGCAAGAAGAACCTCTACCTCAACCTGCT 236
Query 86 GGGGAAGAAACTAAGTCTCAACAAGTTTGCACTTTCTTCAAGAAGCCAACGAAAAGTAAA 145
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GCCCAAGAAACTCAGTCTCAACAAGTTTGCACTTTCTTCAAGAAGCCAACGAAAAGTAAA 296
Query 146 AACATAAGGAAAAGAGCGATTGATGCAGATGAAGAAGATGGAGATTCGAAAAGTGAAAGC 205
|||||||| |||||| | ||||| || ||||||||||| |||||||||||||| ||||||
Sbjct 297 AACATAAGAAAAAGAACCATTGACGCTGATGAAGAAGACGGAGATTCGAAAAGCGAAAGC 356
Query 206 TCTATTTTACATAATCTAAAGAAAGTTGCAAAACCCGATAGCAAGTTGTATTTTTCCTCT 265
|||||| |||| ||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 357 TCTATTCTACAAAATCTAAAGAAAGTTGCAAAACCCGATAGCAAGTTATACTTTTCTTCT 416
Query 266 GGACCAGCTAAGAG--CT-CTACTACTAGTGAAGCTGCTGAGAGACCCGTCTTTCACTAC 322
|||||| ||||||| || |||| || |||| |||| ||||||| ||||||||||||||
Sbjct 417 GGACCATCTAAGAGTTCTACTACAACGAGTGGAGCTCCTGAGAGGTCCGTCTTTCACTAC 476
Query 323 GATTCATCCAAGGAGATCCAGGTTCAAAACGACAGTAGAGCAACAGCTACTCTAGAAACT 382
|||||||||||||| ||||||||||| ||||||||| |||||||||| || || ||||||
Sbjct 477 GATTCATCCAAGGAAATCCAGGTTCAGAACGACAGTGGAGCAACAGCAACCCTTGAAACT 536
Query 383 GAAACCGACTTCAATCAGGACGCACGAGCTATCCGTGAGAGAGTTCTTAAAAAAGCAGAC 442
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAGACCGACTTCAATCAAGACGCACGAGCTATCCGTGAGAGAGTTCTTAAAAAAGCAGAC 596
Query 443 GAAACATTGAAAGGGAATAAGAAAAAGGCTTCAGATGAGAAGCTGTACAAAGGAATTCAT 502
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 597 GAAGCATTGAAAGGGAATAAGAAAAAGGCTTCTGATGAGAAGCTGTACAAAGGAATTCAT 656
Query 503 GGATATACAGATCACAAAGCTGGGTTTAGAAGAGAACAAACAATCTCGAGCGAGAAAGCT 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGATATACAGATCACAAAGCTGGGTTTAGAAGAGAACAAACAATCTCGAGCGAGAAAGCT 716
Query 563 GGAGGCTCACACGGGCCATTAAGAGCTTCTGCTCACATCAGAGTATCGGCTAGATTCGAT 622
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 717 GGAGGCTCACACGGGCCATTAAGAGCTTCTGCTCACATAAGAGTGTCGGCTAGATTCGAT 776
Query 623 TACCAGCCAGATATTTGCAAGGATTACAAAGAAACCGGATACTGTGGATATGGAGATTCA 682
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TACCAGCCAGACATTTGCAAGGATTACAAAGAAACCGGATACTGTGGATATGGAGATTCG 836
Query 683 TGTAAGTTCTTGCATGACCGTGGGGATTACAAACCGGGATGGCAAATAGAGAAAGAATGG 742
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 837 TGTAAGTTCTTGCATGACCGTGGGGATTACAAACCAGGATGGCAGATAGAGAAAGAGTGG 896
Query 743 GAAGAAGCAGAGAAAGTTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGAAGATGAT 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GAAGAAGCAGAGAAAGTTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGAAGATGAT 956
Query 803 GAGGCTGACAACGATAGCGACGAAGACGAAAATGCGTTGCCCTTTGCTTGCTTCATCTGC 862
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 957 GAGGCTGACAAGGATAGCGACGAAGACGAAAATGCATTGCCCTTTGCTTGCTTCATTTGC 1016
Query 863 AGAGAGCCTTTCGTTGATCCAGTTGTCACCAAATGCAAGCATTACTTCTGTGAGCACTGT 922
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1017 AGGGAGCCTTTTGTTGATCCAGTTGTCACCAAATGCAAGCATTACTTCTGTGAGCATTGT 1076
Query 923 GCTTTAAAGCATCACACGAAGAACAAGAAGTGTTTTGTGTGTAACCAACCAACAATGGGG 982
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1077 GCTTTAAAGCATCACACGAAGAACAAGAAGTGCTTTGTGTGTAACCAACCAACAATGGGG 1136
Query 983 ATTTTCAATGCAGCACATGAGATCAAGAAGAGAATGGCTGAAGAACGTAGTAAAGCTGAA 1042
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1137 ATTTTCAATGCAGCACATGAGATCAAGAAGAGAATGGCTGAAGAACGGAGTAAAGCTGAA 1196
Query 1043 GAAGGATTGTGAAGTTCTTCTTTCACAGGACA 1074
|||||||||||||| ||| |||||| |||||
Sbjct 1197 CAAGGATTGTGAAGTCCTTGTTTCACTGGACA 1228
> AT5G06420.1 | Symbols: | Zinc finger (CCCH-type/C3HC4-type RING
finger) family protein | chr5:1961411-1963038 FORWARD LENGTH=1415
Length=1415
Score = 1482 bits (802), Expect = 0.0
Identities = 920/977 (94%), Gaps = 8/977 (1%)
Strand=Plus/Plus
Query 99 AGTCTCAACAAGTTTGCACTTTCTTCAAGAAGCCAACGAAAAGTAAAAACATAAGGAAAA 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGTCTCAACAAGTTTGCACTTTCTTCAAGAAGCCAACGAAAAGTAAAAACATAAGGAAAA 357
Query 159 GAGCGATTGATGCAGATGAAGAAGATGGAGATTCGAAAAGTGAAAGCTCTATTTTACATA 218
|| | ||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 358 GAACCATTGACGCTGATGAAGAAGACGGAGATTCGAAAAGCGAAAGCTCTATTTTACAAA 417
Query 219 ATCTAAAGAAAGTTGCAAAACCCGATAGCAAGTTGTATTTTTCCTCTGGACCAGCTAAGA 278
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| || |
Sbjct 418 ATCTAAAGAAAGTTGCAAAACCCGATAGCAACTTGTACTTTTCTTCTGGACCATCT---A 474
Query 279 GCTCTACTACTAGTGAAGCTGCTGAGAGACCCGTCTTTCACTACGATTCATCCAAGGAGA 338
||| || |||| |||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 475 ---CTAGAACGAGTGGAGCTCCTGAGAGACCCGTTTTTCACTACGATTCATCCAAGGAAA 531
Query 339 TCCAGGTTCAAAACGACAGTAGAGCAACAGCTACTCTAGAAACTGAAACCGACTTCAATC 398
|||||||||| ||||||||| |||||||||| || || ||||||||||||||||||||||
Sbjct 532 TCCAGGTTCAGAACGACAGTGGAGCAACAGCGACCCTTGAAACTGAAACCGACTTCAATC 591
Query 399 AGGACGCACGAGCTATCCGTGAGAGAGTTCTTAAAAAAGCAGACGAAACATTGAAAGGGA 458
| ||||| |||||||||||||| ||||||||||||||||||||| | ||||||| ||||
Sbjct 592 AAGACGCTCGAGCTATCCGTGAAAGAGTTCTTAAAAAAGCAGACCATGCATTGAAGGGGA 651
Query 459 ATAAGAAAAAGGCTTCAGATGAGAAGCTGTACAAAGGAATTCATGGATATACAGATCACA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ATAAGAAAAAGGCTTCAGATGAGAAGCTGTACAAAGGAATTCATGGATATACAGATCACA 711
Query 519 AAGCTGGGTTTAGAAGAGAACAAACAATCTCGAGCGAGAAAGCTGGAGGCTCACACGGGC 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AAGCTGGGTTTAGAAGAGAACAAACAATCTCGAGCGAGAAAGCTGGAGGCTCACACGGGC 771
Query 579 CATTAAGAGCTTCTGCTCACATCAGAGTATCGGCTAGATTCGATTACCAGCCAGATATTT 638
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 772 CTTTAAGAGCTTCTGCTCACATCAGAGTATCGGCTAGATTCGATTACCAGCCAGACATTT 831
Query 639 GCAAGGATTACAAAGAAACCGGATACTGTGGATATGGAGATTCATGTAAGTTCTTGCATG 698
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 832 GCAAGGATTACAAGGAAACCGGATACTGTGGATATGGAGATTCGTGTAAGTTCTTGCATG 891
Query 699 ACCGTGGGGATTACAAACCGGGATGGCAAATAGAGAAAGAATGGGAAGAAGCAGAGAAAG 758
|||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 892 ACCGTGGGGATTACAAGCCGGGATGGCAGATAGAGAAAGAGTGGGAAGAGGCAGAGAAAG 951
Query 759 TTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGAAGATGATGAGGCTGACAACGATA 818
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 952 TTAGGAAGAGAAATAAAGCTATGGGAGTTGAGGATGACGATGATGAGGCTGACAAGGATA 1011
Query 819 GCGACGAAGACGAAAATGCGTTGCCCTTTGCTTGCTTCATCTGCAGAGAGCCTTT-CGTT 877
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| | ||
Sbjct 1012 GCGACGAAGACGAAAATGCATTGCCCTTTGCTTGCTTCATTTGCAGGGAGCCTTTTC-TT 1070
Query 878 GATCCAGTTGTCACCAAATGCAAGCATTACTTCTGTGAGCACTGTGCTTTAAAGCATCAC 937
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1071 GATCCAGTTGTCACCAAATGCAAGCATTACTTCTGTGAGCATTGTGCTTTAAAGCATCAC 1130
Query 938 ACGAAGAACAAGAAGTGTTTTGTGTGTAACCAACCAACAATGGGGATTTTCAATGCAGCA 997
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 ACGAAGAACAAGAAATGCTTTGTGTGTAACCAACCAACAATGGGGATTTTCAATGCAGCA 1190
Query 998 CATGAGATCAAGAAGAGAATGGCTGAAGAACGTAGTAAAGCTGAAGAAGGATTGTGAAGT 1057
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1191 CATGAGATCAAGAAGAGAATGGCTGAAGAACGGAGTAAAGCTGAACAAGGATTGTGAAGT 1250
Query 1058 TCTTCTTTCACAGGACA 1074
||||||||||||||||
Sbjct 1251 CCTTCTTTCACAGGACA 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5