BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918835

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01260.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bin...   475    1e-133


> AT1G01260.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding 
superfamily protein | chr1:109032-111609 FORWARD LENGTH=2578
Length=2578

 Score =  475 bits (257),  Expect = 1e-133
 Identities = 287/302 (95%), Gaps = 0/302 (0%)
 Strand=Plus/Plus

Query  102   CCTATCAGCTTGGAATCGGATATTAATGTTCAAACCTCAGGTGAAGATGTCACAGTGAGA  161
             |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  2058  CCTATCAGCTTGGATTCAGATATAAATGTTCAAACCTCAGGTGAAGATGTCACAGTGAGG  2117

Query  162   ATAAACTGTCCGTTGGAGTCTCATCCAGCTTCTAGAATCTTCCATGCGTTTGAAGAGACT  221
             |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct  2118  ATAAACTGTCCGTTGGAGTCTCATCCGGCTTCCAGAATCTTCCATGCGTTTGAAGAGAGT  2177

Query  222   AAAGTAGAAGTGATGAACTCGAACCTTGAAGTTTCTCAGGACACAGTGTTGCATACGTTT  281
             |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  2178  AAAGTAGAAGTGATAAACTCGAACCTGGAAGTTTCTCAGGACACAGTGTTGCATACGTTT  2237

Query  282   GTAGTCAAATCTGAAGAATTAACGAAAGAGAAGCTGATATCTGCGTTGTCTAGAGAGCCA  341
             ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct  2238  GTAGTCAAATCTGAAGAATTAACGAAAGAGAAGCTGATATCGGCCTTGTCTAGAGAGCAA  2297

Query  342   TCAAATTCAGTTCAGTCAAGAACATCATCTGGTAGATAGCCTTTTGAGAGATAGAAGAAG  401
              |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct  2298  ACAAATTCAGTTCAGTCAAGAACATCATCAGGTAGATAGCCTTTTGAGAGACAGAAGAAG  2357

Query  402   GT  403
             ||
Sbjct  2358  GT  2359



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19051476871


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5