BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918854
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01160.2 | Symbols: GIF2 | GRF1-interacting factor 2 | chr1:... 833 0.0
AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:... 377 7e-104
AT1G01170.1 | Symbols: | Protein of unknown function (DUF1138)... 158 9e-38
> AT1G01160.2 | Symbols: GIF2 | GRF1-interacting factor 2 | chr1:72357-74096
FORWARD LENGTH=1129
Length=1129
Score = 833 bits (451), Expect = 0.0
Identities = 602/668 (90%), Gaps = 38/668 (6%)
Strand=Plus/Plus
Query 104 TACCTTGATGAGAACAAGAAGCTGATAATGGCCATCATGGAAAACCAGAATCTCGGAAAA 163
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 416 TACCTTGATGAGAACAAGAAGCTGATTATGGCCATCATGGAAAACCAGAATCTCGGTAAA 475
Query 164 CTTGCAGAATGTGCCCAGTACCAAGCTCTTCTCCAGAAGAACTTGATGTATCTTGCTGCA 223
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTTGCTGAGTGCGCCCAGTACCAAGCTCTTCTCCAGAAGAACTTGATGTATCTTGCTGCA 535
Query 224 ATTGCTGATGCTCAACCCCCACCACCTACACAAGGAGCTGCACCATCTCCAGCTATGGCT 283
||||||||||||||||||||||||||||| | |||| || |||||||| ||||| | |||
Sbjct 536 ATTGCTGATGCTCAACCCCCACCACCTACGCCAGGACCTTCACCATCTACAGCTGTCGCT 595
Query 284 TCCCAGATGACAACACCGCATCCTGGGATGCAACCACCTAGCTACTTCATGCAACACCCA 343
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 596 GCCCAGATGGCAACACCGCATTCTGGGATGCAACCACCTAGCTACTTCATGCAACACCCA 655
Query 344 CAAGCTTCAGGAATGGGTCAACAAGCATCACCCGCAGGGCTTTTCCCTCCACGAGGTCCT 403
||||| || | | | | |||||| ||||| ||||| | ||||||
Sbjct 656 CAAGCATC----------C--C---C-T-----GCAGGGATTTTCGCTCCAAGGGGTCCT 694
Query 404 TTACAGTTTGGTAGCCCACACCAGCTTCAGGATCCGCAACAGCAGCAG-A--TACATCAG 460
||||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||
Sbjct 695 TTACAGTTTGGTAGCCCACTCCAGTTTCAGGATCCGCAACAGCAGCAGCAGATACATCAG 754
Query 461 CAAGCTATGCAAGGACACATGGGGATTAGACCAATGGGTATGAACAACAACGGGATGCAG 520
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 755 CAAGCTATGCAAGGACACATGGGGATTAGACCAATGGGTATGACCAACAACGGGATGCAG 814
Query 521 CATGCGATGCAAGAACCAGAAACCGGTCTTGGAGGGAACG--------AG-G-AGGCAAG 570
|||||||||||| |||||||||||||||||||||| |||| || | ||| |||
Sbjct 815 CATGCGATGCAACAACCAGAAACCGGTCTTGGAGGAAACGTGGGGCTTAGAGGAGGAAAG 874
Query 571 CAAGATGGAGCAGATGGACAAGGAAAAGATGATGGCAAGTGAAA-GGATCCAAAGAAGCT 629
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 875 CAAGATGGAGCAGATGGACAAGGAAAAGATGATGGCAAGTGAAAAGGATCCAAAGAAGCT 934
Query 630 TTGTTTTGTTGATATTTAGGACTTCTGAGTCTCGTAAGGG-TTTT-GCAATAGCTTATTT 687
|||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||
Sbjct 935 TTGTTTTGTTGATATTTAGGACTTGTGAGTCTCGTAAGGGCTTTTTGCAATAGCTTGTTT 994
Query 688 GAGTTTTT-AACAGAAGATAGACTGTGGAGTAGTTCCGCAAACCGTGTTGTAATGTATTG 746
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 GAGTTTTTTAACAGAAGATAGACTGTGGAGTAGTTCCGCAAACCGTGTTGTAATGTATTG 1054
Query 747 TTATTTAG 754
||||||||
Sbjct 1055 TTATTTAG 1062
Score = 135 bits (73), Expect = 4e-31
Identities = 77/79 (97%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 25 GCAGCAGTCTCCGCAAATGTTTCCGATGGTTCCTTCGATTCCCCCTACTAACAACATCAC 84
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 235 GCAGCAGTCTCCGCAAATGTTTCCGATGGTTCCGTCGATTCCCCCTGCTAACAACATCAC 294
Query 85 TACCGAACAGATCCAAAAG 103
|||||||||||||||||||
Sbjct 295 TACCGAACAGATCCAAAAG 313
> AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:357551-359194
FORWARD LENGTH=1062
Length=1062
Score = 377 bits (204), Expect = 7e-104
Identities = 416/512 (81%), Gaps = 40/512 (8%)
Strand=Plus/Plus
Query 20 AAGATGCAGCAGTCTCCGCAAATGTTTCCGATGG---TTCCTTCGA-TTCC-CCCTACTA 74
||||||||||| ||||| || ||| ||||||||| ||||||| | |||| ||| || |
Sbjct 122 AAGATGCAGCAATCTCCACAGATGATTCCGATGGTTCTTCCTTC-ATTTCCGCCC-ACCA 179
Query 75 ACAACATCACTACCGAACAGATCCAAAAGTACCTTGATGAGAACAAGAAGCTGATAATGG 134
| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 ATAATATCACCACCGAACAGATCCAAAAGTATCTTGATGAGAACAAGAAGCTGATAATGG 239
Query 135 CCATCATGGAAAACCAGAATCTCGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCTTC 194
| ||| ||||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 240 CGATCTTGGAAAATCAGAACCTCGGTAAACTTGCAGAATGTGCTCAGTATCAAGCTCTTC 299
Query 195 TCCAGAAGAACTTGATGTATCTTGCTGCAATTGCTGATGCTCAACCCCCACCACCTACAC 254
|||||||||| ||||||||||| ||||||||||| ||||||||||| | | | | || |
Sbjct 300 TCCAGAAGAATTTGATGTATCTCGCTGCAATTGCGGATGCTCAACCTC-AGC-C--AC-C 354
Query 255 AAGGAGCTGCACCATC-TCC--AGCTATGGCTTCCCA-G-A-TGACAAC-A--CCG-CAT 304
| | |||| ||| | | || ||| ||| || |||| | | || | | | ||| |||
Sbjct 355 A-GCAGCTACACTAACATCAGGAGCCATGACTCCCCAAGCAATGGCTCCTAATCCGTCAT 413
Query 305 CC-TGGGATGCAACCACCTAGCTACTTCATGCAACACCCA-CAAGCT-TCAGGAATGGGT 361
| || | || |||||| |||||||||||||| || | | |||||| | ||||||| |
Sbjct 414 CAATGC-A-GCCACCACCAAGCTACTTCATGCAGCAAC-ATCAAGCTGTG-GGAATGGCT 469
Query 362 CAACAAGCATCACC-CGCAGGGCTTTTCCCTCC-ACGAGGTCCTTTACAGTTTGGTAGCC 419
|||||| || ||| | | ||| |||||||||| | ||||||| || || ||||||||||
Sbjct 470 CAACAA--AT-ACCTC-CTGGGATTTTCCCTCCTA-GAGGTCCATTGCAATTTGGTAGCC 524
Query 420 CACACCAGCTTCAGGATCCGCAACAGCAGCAGATACATCAGCAAGCTATGCAAGGACACA 479
| || ||| ||| ||||||||| || | ||| ||||||| |||||||||||||| ||||
Sbjct 525 CGCATCAGTTTCTGGATCCGCAGCA--A-CAGTTACATCAACAAGCTATGCAAGGGCACA 581
Query 480 TGGGGATTAGACCAATGGGTATGAACAACAAC 511
|||||||||||||||||||| |||| || |||
Sbjct 582 TGGGGATTAGACCAATGGGTTTGAATAATAAC 613
> AT1G01170.1 | Symbols: | Protein of unknown function (DUF1138)
| chr1:73931-74737 REVERSE LENGTH=515
Length=515
Score = 158 bits (85), Expect = 9e-38
Identities = 95/99 (96%), Gaps = 3/99 (3%)
Strand=Plus/Minus
Query 659 TCTCGTAAGGG--TTTTGCAATAGCTTATTTGAG-TTTTTAACAGAAGATAGACTGTGGA 715
||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 515 TCTCGTAAGGGCTTTTTGCAATAGCTTGTTTGAGTTTTTTAACAGAAGATAGACTGTGGA 456
Query 716 GTAGTTCCGCAAACCGTGTTGTAATGTATTGTTATTTAG 754
|||||||||||||||||||||||||||||||||||||||
Sbjct 455 GTAGTTCCGCAAACCGTGTTGTAATGTATTGTTATTTAG 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5