BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918855
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01150.1 | Symbols: | Homeodomain-like protein with RING/FY... 839 0.0
> AT1G01150.1 | Symbols: | Homeodomain-like protein with RING/FYVE/PHD-type
zinc finger domain | chr1:70115-72138 REVERSE
LENGTH=1178
Length=1178
Score = 839 bits (454), Expect = 0.0
Identities = 732/861 (85%), Gaps = 40/861 (5%)
Strand=Plus/Plus
Query 67 TCTGCCGGTTGATGAAGATCATATCGCTCTCCTCAAGAGTCCTTATCTAGGTGAAATTGT 126
||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 152 TCTCCCGCTTGATGAAGATGATATCGCTCTCCTCAAGAGTCCTTATATAGGTGAAATTGT 211
Query 127 TGAAGAAATTAGCTCTGTGAGCG---A--G-A-AGCTCA----A-TGCTCAGTGTGATGA 174
|||||||||| ||| |||||| | | | | ||||| | || ||||||||||||
Sbjct 212 TGAAGAAATTGGCTTTGTGAGAGAAAAGCGCATTGCTCATTGTATTGTTCAGTGTGATGA 271
Query 175 TGGTGGT-A-G-TGACGTCAACTCTGCTCCAAACATTTTCTA-TTTTGATCATGTGCCTC 230
||||||| | | ||||||||||||||||||||||||||| | || |||| |||||||||
Sbjct 272 TGGTGGTGATGAGGACGTCAACTCTGCTCCAAACATTTTC-ACTTATGATAATGTGCCTC 330
Query 231 CTAAGAAGCGCCGCTACCTTGGGACAAGTGACACTTGGAGAAGTTTTGAGCCGTTGAACG 290
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 331 TTAAGAAGCGCCACTACCTTGGGACAAGTGACACTTTCAGAAGCTTTGAGCCGTTGAACG 390
Query 291 AAGACGCGTGTGTCGTATGCGATATTACAGACGATAGTGTAGCGCCTTGTTCTGGGAATG 350
|| |||| ||| | |||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 391 AACACGCATGTATTGTATGCGATATTGCAGACGATGGTGTAGTACCTTGTTCTGGGAATG 450
Query 351 ACTGTCCTATCTCTGTTCACAGGGAGTGTGCTGAGCTTGATTGTGAAGATTCTGCAACCT 410
| || ||| || ||||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct 451 AATGCCCTCTCGCTGTTCACAGGAAGTGTGTTGAGCTTGATTGTGAAGATCCTGCAACCT 510
Query 411 CTTATTGTCCCTATTGTTGGTTTAAAGATAAAGCGACTAGATCCACGACATTGAGAAC-A 469
||| |||||||||||||||||||| || |||| |||||||||||| | |||||||| |
Sbjct 511 TTTACTGTCCCTATTGTTGGTTTAAGGAGCAAGCTACTAGATCCACGGCTTTGAGAACAA 570
Query 470 GTGGGTGTTGCAGCTGCGAAGACACTTGATCAATATAGATGTACTAAGCTTAAGAGTGGA 529
| ||||||||||||||||||||| |||| ||||||| |||||| | |||| | |||||||
Sbjct 571 G-GGGTGTTGCAGCTGCGAAGACCCTTGTTCAATATGGATGTAGTGAGCTGAGGAGTGGA 629
Query 530 GATATAGCCATGGCGAGAGAAAATAATCAACTAGAGAATGATAATGATAATTCACT-CTC 588
||||||| |||| |||||||||| | |||||||||||||| | |||||||||||| | |
Sbjct 630 GATATAGTCATGACGAGAGAAAACAGTCAACTAGAGAATGGTTCTGATAATTCACTAC-C 688
Query 589 AATGCAATTACATGAAAACCTTCATCAATTGCGGGAAGTTGTCGGGCAACTTAAGGCTCA 648
||||||| ||||||| |||||||||||||| | ||| | ||| ||| ||||||||||
Sbjct 689 AATGCAACTACATGAGAACCTTCATCAATTACAAGAACTGGTCAAGCACCTTAAGGCTCG 748
Query 649 AAATTTCCGGTTTGAC--G-----AGA-C-A---ATTG---TGGAGAAAGCTTGCGGAGA 693
||||| || ||| ||| | ||| | | |||| |||||||| ||||||||||
Sbjct 749 AAATTCCCAGTTAGACGAGTCAACAGATCAATTCATTGATATGGAGAAATCTTGCGGAGA 808
Query 694 AGCTTGTGTTGACGTTGATGATCAGCGGAAAAGGGT-CTTATGGACAGCCAAGGAAGAGA 752
||||| || || ||| ||||||||| |||||||| | ||||||||| ||| |||||||
Sbjct 809 AGCTTATGCTGTTGTTAATGATCAGCCAAAAAGGGTAC-TATGGACAGTCAACGAAGAGA 867
Query 753 ACATGTTGAGGGTGGGAGTGGAGATATTTGCAGCTACAATCAATAAAAACATACCTTGGA 812
| |||||||||| ||||||||||| |||| | | ||||||||| |||||||| |||||||
Sbjct 868 AGATGTTGAGGGAGGGAGTGGAGAAATTTTCTGATACAATCAACAAAAACATGCCTTGGA 927
Query 813 AGAAGATTTTGGAGATGGGAAAAGGTATATTCCACA-AGACTCGTAATTCCTCAGATCTT 871
|||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 928 AGAAGATTTTGGAGATGGGAAAAGGTATATTCCACACA-ACTCGTAATTCCTCCGATCTT 986
Query 872 AAGGACAAGTGGAGAAACATG 892
|||||||| |||||||| |||
Sbjct 987 AAGGACAAATGGAGAAATATG 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5