BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918872
Length=646
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02210.1 | Symbols: | NAC (No Apical Meristem) domain trans... 246 2e-64
> AT1G02210.1 | Symbols: | NAC (No Apical Meristem) domain transcriptional
regulator superfamily protein | chr1:427548-427811
REVERSE LENGTH=264
Length=264
Score = 246 bits (133), Expect = 2e-64
Identities = 209/244 (86%), Gaps = 12/244 (5%)
Strand=Plus/Plus
Query 236 GGTATGGTACTTCTATAGTCGTGATGACTATAAGTTTAACGAAGAAATATGGAAAACGAG 295
|||||||| ||||| |||| ||||||| || | |||||||||||||| ||||||||
Sbjct 3 GGTATGGTTCTTCTTTAGTTGTGATGA--AT-A---TAACGAAGAAATATTGAAAACGAA 56
Query 296 TTCGGGTTATTGGAAAGAAACCGGATCCAACACACCAATCATCGGTAAGAGGAAAAGAAC 355
||||||||||||||||||||| | |||||||||||||||||| || ||| ||| || |
Sbjct 57 TTCGGGTTATTGGAAAGAAACTGTATCCAACACACCAATCATTGGCAAGTGGATAACTAG 116
Query 356 CAATGGTGTTAAGATTGGTGAGAAGA-AAGTTTTGGTGTTT-CAATCTTGTGCAAATCCT 413
||||||||||| ||||||||||| | |||||||||| ||| ||||| | || ||| | |
Sbjct 117 TAATGGTGTTAAAATTGGTGAGAA-ACAAGTTTTGGT-TTTCCAATCGTATG-AAAACAT 173
Query 414 -AATGGATCCAAATCCGATTGGGTAATGCACGTGTATCAACCCACGTTTTTGCCTCCCGA 472
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 174 CAATGGATCCAAATCCGATTGGGTAATGCACGTGTATCAACCAACGTTTTTGCCTCCTAA 233
Query 473 TCAG 476
||||
Sbjct 234 TCAG 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31195405287
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5