BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918879
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02290.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1411 0.0
> AT1G02290.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G45830.1);
Has 134 Blast hits to 134 proteins in 37 species: Archae -
0; Bacteria - 0; Metazoa - 54; Fungi - 0; Plants - 78; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:450527-452737
REVERSE LENGTH=1695
Length=1695
Score = 1411 bits (764), Expect = 0.0
Identities = 892/955 (93%), Gaps = 3/955 (0%)
Strand=Plus/Plus
Query 21 AGATGACTAAGAATCAAATAGTTGGGGTAGACTCAGAAGATGA--A-TCTGATGATTGCG 77
|||||| ||||||||||| ||||||| ||||||| |||||||| | |||||||||| ||
Sbjct 243 AGATGAATAAGAATCAAACAGTTGGGCTAGACTCTGAAGATGATGACTCTGATGATTACG 302
Query 78 ACATTGCGGAAGCCAACTGTGAGCTAGCTATGGTAGAAGGTCAGCTCTGTAACATACCAT 137
|||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 303 ACATTGCGCAAGTAAACTGTGAGCTAGCTTTGGTTGAAGGTCAGCTCTGTAACATACCAT 362
Query 138 ACGAGCTCTATGATCTACCTGATTTAACGGGGATATTGTCTGTTGAGACTTGGAACTCAG 197
|||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 363 ACGAGCTCTACGATCTACCAGATTTAACGGGAATATTGTCTGTTGAGACTTGGAACTCAC 422
Query 198 TTCTTACAGACGAAGAAAGATTCTTCCTCTCATGTTTTCTGCCAGATATGGATCAACAGA 257
|||| || || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 423 TTCTGACTGAAGAAGAAAGATTCTTCCTCTCATGTTTTCTGCCAGATATGGATCCACAGA 482
Query 258 CTTTTAGTCTGACGATGCAGGAACTTCTCGGTGGTGCCAATTTATATTTTGGGAATCCAG 317
|||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 483 CTTTCAGTTTGACGATGCAGGAACTTCTTGATGGTGCCAATTTATATTTTGGGAATCCAG 542
Query 318 TGGATAAGTTTTACAAGAATTTGAGAGGAGGATTGTTTACTCCAAAGGTAGCTTGTTTCA 377
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 543 AGGATAAGTTTTACAAGAATTTGCTAGGTGGATTGTTTACTCCAAAGGTAGCTTGTTTCA 602
Query 378 AACAAGGTGTTATGTTTGTCAAGAGGAGAAAGTATTACTACTCTTTAAAGTTCTATCATG 437
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AAGAAGGTGTTATGTTTGTCAAGAGGAGAAAGTATTACTACTCTTTAAAGTTCTATCATG 662
Query 438 AAAAGCTGATCAAGACATTCACCGAGATGCAAAGGTTGTGGATTCAGTATGGaaaaaaaT 497
|||||||||||| |||||| ||||| ||||||||| ||||| ||||||||||||| ||||
Sbjct 663 AAAAGCTGATCAGGACATTTACCGAAATGCAAAGGGTGTGGGTTCAGTATGGAAATAAAT 722
Query 498 TCGGCAATTACTCAAGACTCCTCCTTTGGTCAGGACGAACTCAAACCGGTAATCTGAAGC 557
| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 723 TGGGCAATTACTCAAGGCTCCTCATTTGGTCAGGACGAACTCAAACCGGTAATCTCAAGC 782
Query 558 GACTGGGCCTTAATAGAGTTCCATCTGAGGAAATGGATAGTGCTACATGTAGATTCAAAA 617
||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 783 TACTGGACCTCAATAGAGTTCCATCTAAGGAAATGGATAGTGCTACATGTAGATTCAAAA 842
Query 618 CTCCCAATGTAGTGAAACCTGTGGAAAGAAATAGAACGAAAAGTTTAACCTTCCCTCGCA 677
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 843 CTCCCAATGTAGTGAAACCCGTGGAAAGAAATAGATCGAAAAGTTTAACCTTCCCTCGCA 902
Query 678 GTGGTAGCTCCAAGAACGGTCTCAAGATAAAGATAACCAAGGGAGGAGTATTCGGGTACC 737
|||| |||||||||||| |||||||||||||||||||||||| |||||||||| |||| |
Sbjct 903 GTGGCAGCTCCAAGAACAGTCTCAAGATAAAGATAACCAAGGAAGGAGTATTCCGGTATC 962
Query 738 AACGTTCCAGCTTAGTTTCTGCTGGCTATCATCATCAGACTTTGCCAAAGGGTCTTCTCA 797
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 963 AAGGTTCCAGCTTAGTTTCTGCTGGCCATCATCATCAGACTTTGCCAAAGGGTGTTCTCA 1022
Query 798 AATTAGTCCCTAAAGCTTCTTCTGCCATACTCAGGGAACCCTATGTAGCTCCAGGAAACA 857
|||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1023 AATTAGTCCCTAAATCTTCTTCTGCCATCCTCAGGAAACCCTATGTAGCTCCAGGAAACA 1082
Query 858 ATCTCCTGCAAATCCATGAAACCGTTTCAAAGAGTACTAGATTTGCAGCGTCTCCATACT 917
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1083 ATCTCCTGCAAATCCATGAAACCGGTTCAAAGAGTACTAGATTTGCAGCGTCTCCATACT 1142
Query 918 TAGGTACGAGATTTGAGAAACCACCCTACGGAACTATCGCCTGTTCTATCACAGA 972
||||||||| ||||||||||||||||||||||||| | | |||||||||| ||||
Sbjct 1143 TAGGTACGACATTTGAGAAACCACCCTACGGAACTCTTGGCTGTTCTATCCCAGA 1197
Score = 553 bits (299), Expect = 2e-156
Identities = 374/409 (91%), Gaps = 10/409 (2%)
Strand=Plus/Plus
Query 1000 AGACCCTTTCTTAACCTATTTGGAAACAACACAAAGATCAA-CCGAAGGTACAGAACCGG 1058
||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||
Sbjct 1195 AGACCCTTTCTTAACCTATTTGGAAACTACACAAAGATCAATCC-AAGGTACAGAACCGG 1253
Query 1059 TGTTTCATGATCCAACACACACTATACCCAGAGCTCTTGGTGTTTCAAATTACTCCAGCA 1118
||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||| ||
Sbjct 1254 TGTTTCATGATCCAACACACACTGTTCCCAGTGCTCTCCGTGTTTCAAATTACTCCATCA 1313
Query 1119 CAGAACATCATAATCTGCCTCTAAAGCAAGAAGAATATGTCCACTACCACCTGAACTCTC 1178
||| | | || ||| | ||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1314 CAG-A-A-CAGAATATACCTCTAAAGCAAGAAGAATATGTCCGGTACCACCTGAAGTCTC 1370
Query 1179 CTGGTTTTGAGCCGAGGACTGTTGACAGAGGCTCTGAAACAACAGAGAGCAAGAGGATTT 1238
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CTGGTTTTAAGCCTAGGACTGTTGACAGAGGCTCTGAAACAACAGAGAGCAAGAGGATTT 1430
Query 1239 TGTCTGGTAATAACTTTCAGAGGGAAGCCAAGG-TCCTGAGAAAACCGCTGCGTGTCCTT 1297
|||| ||||||||||||||||||||||||||| || |||||||||||||| | |||||
Sbjct 1431 CGTCTAGTAATAACTTTCAGAGGGAAGCCAAGGCTC-TGAGAAAACCGCTGGGGGTCCTG 1489
Query 1298 AGCGAAGACAATCATGCTCGAGAAGCCAATACTGACAATTTGTATTCCTTGACGTACAAG 1357
||||||||||||||||||||||||||||||| |||| |||||| ||||||||| ||||||
Sbjct 1490 AGCGAAGACAATCATGCTCGAGAAGCCAATAGTGACCATTTGTTTTCCTTGACTTACAAG 1549
Query 1358 CGAAGAAAGGTTCAGAGAATCGCTTGAGC-CT--TGACGCTATGCTAAT 1403
||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1550 CGAAGAAAGGTTCAGAGAATCGCTTGAGCTCCCGTGACGCTATGCTAAT 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5