BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918881
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02305.1 | Symbols: | Cysteine proteinases superfamily prot... 1858 0.0
AT1G02300.1 | Symbols: | Cysteine proteinases superfamily prot... 935 0.0
> AT1G02305.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:455688-458164 FORWARD LENGTH=1407
Length=1407
Score = 1858 bits (1006), Expect = 0.0
Identities = 1087/1126 (97%), Gaps = 6/1126 (1%)
Strand=Plus/Plus
Query 5 CAGAAGAGAAAGATTCATGGCTGATAATTGTATCA-A--ACTTCACTTAGCCTCTGTTTT 61
|||||||||||||| |||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 113 CAGAAGAGAAAGATCCATGGCTGATAATTGTATCAGACTTCTTCACTCAGCCTCTGTTTT 172
Query 62 CTTCTTTTTAGGGCTTCTAATTTCATCCTTCAAC---TTGCAGGGTATTGCAGCAGAAAA 118
||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 173 CTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGGGTATTGCAGCTGAAAA 232
Query 119 TCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGAATGAGATTGTCAAGGAAGTCAA 178
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 233 TCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAGAATGAGATTGTAAAGGAAGTCAA 292
Query 179 TGAGAATCCAAACGCTGGATGGAAAGCTGCTTTCAATGATCGGTTTGCAAACGTCACTGT 238
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 293 TGAGAATCCAAACGCTGGATGGAAAGCTTCTTTCAATGATCGGTTTGCAAACGCCACTGT 352
Query 239 TGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TGCAGAGTTTAAGCGCCTTCTTGGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGT 412
Query 299 ACCTATTGTGAGTCATGATATATCTTTGAAGCTTCCTAAAGAATTTGATGCTAGAACCGC 358
|||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 413 GCCTATTGTAAGCCATGATATATCTTTGAAGCTTCCAAAAGAATTTGATGCTAGAACCGC 472
Query 359 TTGGTCACAGTGCACCAGTATTGGAAGGATCTTAGATCAGGGTCATTGTGGTTCATGCTG 418
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 473 TTGGTCACAGTGCACCAGTATTGGAAGGATCTTAGATCAGGGTCACTGTGGTTCTTGCTG 532
Query 419 GGCCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGAATAT 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 533 GGCCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGAATGT 592
Query 479 TTCTTTATCTGTCAATGATCTCTTAGCATGTTGTGGATTCCTTTGCGGACAAGGTTGTAA 538
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 593 TTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGCGGTCAAGGTTGTAA 652
Query 539 CGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTAACTGAAGA 598
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 653 TGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCACCACGGTGTAGTCACTGAAGA 712
Query 599 GTGTGATCCATACTTTGACAATACTGGCTGCTCTCACCCGGGATGTGAACCCGCTTACCC 658
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 713 GTGTGATCCATACTTCGACAATACTGGTTGCTCGCACCCGGGATGTGAACCCGCTTACCC 772
Query 659 TACACCAAAATGTGCGAGGAAATGTGTTAGCGGAAACCAGCTTTGGCGTGAATCAAAACA 718
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TACACCAAAATGTGCAAGGAAATGTGTTAGCGGAAACCAGCTTTGGCGTGAATCAAAACA 832
Query 719 TTATGGTGTTAGCGCGTACAAGGTCAGATCTCACCCTGATGACATTATGGCAGAAGTTTA 778
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTATGGTGTTAGTGCGTACAAGGTCAGATCTCACCCTGATGACATTATGGCAGAAGTTTA 892
Query 779 CAAAAATGGACCTGTTGAGGTTGCCTTCACTGTTTACGAGGACTTTGCACATTACAAATC 838
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 893 CAAAAATGGACCTGTTGAGGTTGCCTTCACTGTTTACGAGGACTTTGCGCATTACAAATC 952
Query 839 AGGAGTGTACAAGCACATAACAGGTACTAACATTGGAGGTCATGCTGTTAAGCTTATTGG 898
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 953 TGGAGTGTACAAGCACATAACAGGTACTAACATTGGAGGTCATGCTGTTAAACTTATTGG 1012
Query 899 TTGGGGAACTTCTGATGACGGTGAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAG 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CTGGGGAACTTCTGATGACGGTGAAGATTATTGGTTGCTTGCAAATCAATGGAACCGAAG 1072
Query 959 CTGGGGAGATGATGGTTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACA 1018
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CTGGGGTGATGATGGGTACTTCAAGATCAGGAGAGGAACAAACGAATGTGGCATTGAACA 1132
Query 1019 TGGTGTTGTAGCCGGTTTACCTTCAGACAGGAACGTATTTAAAGGTATTACTACTTCAGA 1078
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1133 TGGTGTTGTAGCTGGTTTACCTTCAGACAGGAACGTAGTTAAAGGTATTACTACTTCAGA 1192
Query 1079 TGATCTTCTTGTTTCCTCATTTTAAACAGGAAGATGTGTCTCTACT 1124
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1193 TGATCTTCTTGTTTCCTCATTTTAAACAGGAATATGTGTCTCTACT 1238
> AT1G02300.1 | Symbols: | Cysteine proteinases superfamily protein
| chr1:453288-455463 FORWARD LENGTH=1227
Length=1227
Score = 935 bits (506), Expect = 0.0
Identities = 657/731 (90%), Gaps = 6/731 (1%)
Strand=Plus/Plus
Query 398 GGGTCATTGTGGTTCATGCTGGGCCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTG 457
||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 435 GGGTCATTGTGGTTCTTGCTGGGCATTTGGTGCTGTTGAATCACTGTCCGACAGGTTCTG 494
Query 458 CATCAAATATAACATGAATATTTCTTTATCTGTCAATGATCTCTTAGCATGTTGTGGATT 517
||||||||||||| ||||| |||| ||||||| ||||||| || ||||||||||||||||
Sbjct 495 CATCAAATATAACTTGAATGTTTCCTTATCTGCCAATGATGTCATAGCATGTTGTGGATT 554
Query 518 CCTTTGCGGACAAGGTTGTAACGGTGGATACCCAATTGCTGCGTGGCGGTACTTTAAGCA 577
|||||||| |||||||| ||||| | |||||| | ||| ||| |||||||||| |
Sbjct 555 ACTTTGCGGTTTTGGTTGTAATGGTGGTTTCCCAATGGGTGCATGGTTGTACTTTAAGTA 614
Query 578 CCACGGTGTAGTAACTGAAGAGTGTGATCCATACTTTGACAATACTGGCTGCTCTCACCC 637
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 615 CCACGGTGTAGTAACCCAAGAGTGTGATCCATACTTTGACAATACTGGTTGCTCTCACCC 674
Query 638 GGGATGTGAACCCGCTTACCCTACACCAAAATGTGCGAGGAAATGTGTTAGCGGAAACCA 697
||||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||||
Sbjct 675 GGGATGTGAACCCACTTACCCTACACCAAAATGTGAGAGGAAATGTGTAAGCAGAAACCA 734
Query 698 GCTTTGGCGTGAATCAAAACATTATGGTGTTAGCGCGTACAAG-GTCAGAT-CTCACCCT 755
||| ||| ||||||||||||| |||||||| |||| ||| || ||| || || |||||
Sbjct 735 GCTATGGGGTGAATCAAAACACTATGGTGTCGGCGCATAC-AGAATCA-ATCCTGACCCT 792
Query 756 GATGACATTATGGCAGAAGTTTACAAAAATGGACCTGTTGAGGTTGCCTTCACTGTTTAC 815
| ||||||||||| || |||||||| ||||||||||| |||||||| || || ||||||
Sbjct 793 CAAGACATTATGGCTGAGGTTTACAAGAATGGACCTGTCGAGGTTGCTTTTACCGTTTAC 852
Query 816 GAGGACTTTGCACATTACAAATCAGGAGTGTACAAGCACATAACAGGTACTAACATTGGA 875
||||||||||||||||||||||||||||| |||||| ||||||| |||||||| ||||||
Sbjct 853 GAGGACTTTGCACATTACAAATCAGGAGTATACAAGTACATAACGGGTACTAAGATTGGA 912
Query 876 GGTCATGCTGTTAAGCTTATTGGTTGGGGAACTTCTGATGACGGTGAAGATTATTGGTTG 935
|||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 913 GGTCATGCAGTTAAGCTCATTGGCTGGGGAACTTCTGATGACGGCGAAGATTATTGGTTG 972
Query 936 CTTGCAAATCAATGGAACCGAAGCTGGGGAGATGATGGTTACTTCAAGATCAGGAGAGGA 995
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 973 CTTGCAAATCAATGGAACCGAAGCTGGGGTGATGATGGTTACTTCAAGATCAGGAGAGGA 1032
Query 996 ACAAACGAATGTGGCATTGAACATG-GTGTTGTAGCCGGTTTACCTTCAGACAGGAACGT 1054
|| |||||||||||||||||||| | |||||||||| |||||||||||||| | ||||||
Sbjct 1033 ACGAACGAATGTGGCATTGAACA-GAGTGTTGTAGCTGGTTTACCTTCAGAGAAGAACGT 1091
Query 1055 ATTTAAAGGTATTACTACTTCAGATGATCTTCTTGTTTCCTCATTTTAAACAGGAAGATG 1114
||||||||||||||| ||||||||||||||||| ||||||||| | |||||| || ||||
Sbjct 1092 ATTTAAAGGTATTACCACTTCAGATGATCTTCTGGTTTCCTCAGTCTAAACAAGACGATG 1151
Query 1115 TGTCTCTACTT 1125
|||| ||||||
Sbjct 1152 TGTCCCTACTT 1162
Score = 449 bits (243), Expect = 2e-125
Identities = 290/313 (93%), Gaps = 2/313 (1%)
Strand=Plus/Plus
Query 82 TTTCATCCTTCAACTTGCAGGGTATTGCAGCAGAAAATCTTTCCAAGCAGAAACTGACCT 141
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 59 TTTCATCCTTCAACTTGCAGGGTATTGCAGCGGAAAATCTTTCCAAGCAGAAACTGACCT 118
Query 142 CA-TGGATTCTTCAGAATGAGATTGTCAAGGAAGTCAATGAGAATCCAAACGCTGGATGG 200
|| | ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 119 CACT-GATTCTTCAGAATGAGATTGTAAAGGAAGTCAATGAGAATCCAAACGCTGGTTGG 177
Query 201 AAAGCTGCTTTCAATGATCGGTTTGCAAACGTCACTGTTGCAGAGTTTAAGCGCCTTCTT 260
||||||||||||||||||||||||||||| | ||| ||||||||||||||||| || ||
Sbjct 178 AAAGCTGCTTTCAATGATCGGTTTGCAAATGCCACCGTTGCAGAGTTTAAGCGACTCCTC 237
Query 261 GGTGTTAAACCAACACCAAAGACGGAATTTTTGGGTGTACCTATTGTGAGTCATGATATA 320
||||||| || |||||||||||||| || || |||||||||||||| || |||||| ||
Sbjct 238 GGTGTTATACAAACACCAAAGACGGCATACTTAGGTGTACCTATTGTAAGACATGATTTA 297
Query 321 TCTTTGAAGCTTCCTAAAGAATTTGATGCTAGAACCGCTTGGTCACAGTGCACCAGTATT 380
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 TCGTTGAAGCTTCCTAAAGAATTTGATGCTAGAACCGCTTGGTCACATTGCACCAGTATT 357
Query 381 GGAAGGATCTTAG 393
||||||||||||
Sbjct 358 CGAAGGATCTTAG 370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5