BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918883
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02330.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Hepatocel... 1399 0.0
> AT1G02330.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Hepatocellular
carcinoma-associated antigen 59 (InterPro:IPR010756);
Has 1239 Blast hits to 998 proteins in 204 species: Archae
- 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87;
Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink).
| chr1:462075-463612 REVERSE LENGTH=1058
Length=1058
Score = 1399 bits (757), Expect = 0.0
Identities = 841/881 (95%), Gaps = 8/881 (1%)
Strand=Plus/Plus
Query 1 TCCGATAGTTTCTGTCTGCGATGCCACCGAAGAGAAATTTCAGGAAGCGTAGCTTCGAGG 60
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 72 TCCGATAGTTTCTGGCTGCGATGCCGCCGAAGAGAAATTTCAGGAAGCGTAGCTTCGAGG 131
Query 61 AGGAAGAGGAAGATAATGATGTAAACAAAGCCGCAATTTCAGATGAAGAAGAGAAGCGAA 120
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 132 AGGAAGAAGAAGATAATGATGTAAACAAAGCCGCAATTTCAGAGGAAGAAGAGAAGCGAA 191
Query 121 GATTAGCGTTGGAGGAGGTGAAGTTTCTGCAGAAGCTGAGAGAGAGAAAATTAGGGATCC 180
|||| ||||| ||||||||||||||| ||||||||||| ||||||| |||||||| ||||
Sbjct 192 GATTGGCGTTAGAGGAGGTGAAGTTTTTGCAGAAGCTGCGAGAGAGGAAATTAGGTATCC 251
Query 181 CAGCTTTA---TCTACGGCGCAATCTAGCATCGGAAAAGCGAAACCAGTGGAGAAAACTG 237
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 252 CAGCTTTATCTTCTACGGCGCAATCTAGCATCGGAAAAGTGAAACCAGTGGAGAAAACTG 311
Query 238 AAGCTGAAGGAGAGAAAGAGGAGCTTGTGTTGCAAGATACTTTTGCTCAAGAGACTGCTG 297
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AAACTGAAGGAGAGAAAGAGGAGCTTGTGTTGCAAGATACTTTTGCTCAAGAGACTGCTG 371
Query 298 TTTTGATTGAAGATCCCAACATGGTAAAGTACATTGAACAAGAATTGGCGAAGAAAAGGG 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 372 TTTTGATTGAAGATCCCAACATGGTAAAGTACATTGAACAAGAATTGGCGAAGAAACGGG 431
Query 358 GGAAGAA-TATTGATGATGCAGAGGAAGTTGAGAATGAATTGAAGCGAGTGGAAGATGAG 416
| ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 432 G-AAGAAATATTGATGATGCAGAGGAGGTTGAGAACGAATTGAAGCGAGTGGAAGATGAG 490
Query 417 TTATATAAGATACCTGATCATCTTAAAGTTAAGAAGCGGAGCTCGGAAGAGAGCTCGACG 476
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 491 TTATATAAGATACCTGATCATCTTAAAGTCAAGAAGCGTAGCTCGGAAGAGAGCTCGACG 550
Query 477 CAATGGACTACCGGAATAGCAGAAGTCCAACTCCCAATCGAATACAAGCTGAAGAACATT 536
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 551 CAGTGGACTACCGGAATAGCAGAAGTCCAACTCCCAATTGAATACAAGCTGAAGAACATT 610
Query 537 GAAGAAACAGAAGCTGCCAAGAAGCTTCTGCAAGAGAGGAGGCTTATGGGTCGGCCAAAA 596
|||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 611 GAAGAAACTGAAGCTGCCAAGAAGCTTTTGCAAGAGAGGAGACTTATGGGTCGGCCAAAG 670
Query 597 TCAGAGTTTAGCATTCCGTCTAGTTATAGTGCGGATTACTTCCAACGCGGGAAAGATTAT 656
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TCAGAGTTTAGTATCCCGTCTAGTTATAGTGCGGATTACTTCCAACGCGGGAAAGATTAT 730
Query 657 GCTGAGAAGCTTAGAAGAGAGCATCCTGAGCTATACAAAGATAGAGGAGGACCTCAAGCG 716
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GCTGAGAAGCTTAGGAGAGAGCATCCTGAGCTATACAAAGATAGAGGAGGACCTCAAGCG 790
Query 717 GATGGTGAAGGTGCTAAACCTTCTACTAGCAGTAGTA--AC-AATAATGCTGATTCAGGG 773
|| ||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 791 GACGGTGAAGCAGCTAAACCTTCTACTAGCAGTAGTACTAATAATAATGCTGATTCAGGG 850
Query 774 AAAAGCAGACAAGCAGCAACTGATCAAATCATGTTAGAACGATTTCGCAAGAGAGAGCGT 833
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 851 AAAAGCAGACAAGCAGCAACTGATCAAATCATGTTGGAACGATTTCGCAAGAGAGAGCGT 910
Query 834 AACCGTGTAATGCGAAGATAAAAGTAAAAGCATGTTTGCAG 874
||||||||||||||||||||||||||||| |||||||||||
Sbjct 911 AACCGTGTAATGCGAAGATAAAAGTAAAAACATGTTTGCAG 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42648790803
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5