BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918888
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02360.1 | Symbols: | Chitinase family protein | chr1:47199... 1273 0.0
> AT1G02360.1 | Symbols: | Chitinase family protein | chr1:471990-473160
REVERSE LENGTH=1011
Length=1011
Score = 1273 bits (689), Expect = 0.0
Identities = 802/856 (94%), Gaps = 9/856 (1%)
Strand=Plus/Plus
Query 8 GATCCCTC-C-AAAAATGGCT---CAGCACTCTATTCTCCTCTTATGCTTCTTCCTCTCA 62
|||||||| | |||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 30 GATCCCTCTCTAAAAATGGCTCAACAACACTCTTTTCTCCTCTTATGCTTCTTCCTCTCA 89
Query 63 ATCTCTTATTTACTATCTTCCTG-CCAAACCGAAGCCACCGCAATCGAGAGATTGGTGCC 121
||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||
Sbjct 90 ATCTCTTATTTACTATCTTCC-GCCCAAACCGAAGCCACCTCAATCGAGAGATTAGTGCC 148
Query 122 AAGAGACCTCTACAACAAAATTTTCATCCACAAGGACAATACCGCTTGTCCCGCAAACGG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 149 AAGAGACCTCTACAACAAAATTTTCATCCACAAGGACAATACCGCTTGTCCCGCAAATGG 208
Query 182 TTTCTACACTTACGAATCCTTTGTGCAGGCGACGAGGCGGTTCCCGAGATTCGCGAGCGT 241
|||||||||||||||||| ||||| || |||||||||||||| |||||||||| ||||||
Sbjct 209 TTTCTACACTTACGAATCATTTGTCCAAGCGACGAGGCGGTTTCCGAGATTCGGGAGCGT 268
Query 242 AGGAAGCCCCGCGACACAGCGGCTCGAAGTGGCTGCGTTTTTGGCTCAGATTTCACACGA 301
||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 269 AGGAAGCCCCGTGACACAACGACTCGAAGTGGCTGCATTTTTGGCTCAGATTTCACACGA 328
Query 302 GACAACAGGAGGATGGGCAACAGCGCCAGACGGACCGTACGCTTGGGGATTGTGCTTTAA 361
||| || |||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 329 GACGACCGGAGGATGGGCAACGGCACCAGACGGACCGTACGCTTGGGGATTATGCTTTAA 388
Query 362 GGAAGAAGTGAGTCCACAAAGCAATTATTGTGATTCTTCTAATACGCAATGGCCTTGTTT 421
|||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||
Sbjct 389 AGAAGAAGTGAGTCCACAAAGCACTTATTGTGATTCTTCTGATACACAGTGGCCTTGTTT 448
Query 422 CCCTAACAAGACTTATCAAGGAAGAGGTCCAATTCAACTATCGTGGAACTACAATTACGG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 CCCTAACAAGACTTATCAAGGAAGAGGTCCAATTCAACTATCGTGGAACTACAATTACGG 508
Query 482 ACCGGCCGGTCGAGCTCT-AGGATTTGATGGTCTAAAGAATCCAGAAACGGTGTCAAATA 540
||||||||||||||| || |||||| || ||||||| |||||||||||||||||||||||
Sbjct 509 ACCGGCCGGTCGAGC-CTTAGGATTCGACGGTCTAAGGAATCCAGAAACGGTGTCAAATA 567
Query 541 ATTCAGTGATAGCTTTCCAAACAGCTCTTTGGTTTTGGATGACGCCGCAGAGTCCGAAAC 600
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 568 ATTCAGTGATAGCTTTTCAAACAGCACTTTGGTTTTGGATGACGCCACAGAGTCCCAAAC 627
Query 601 CGTCGTGCCATGACGTCATGATCGGAAAATACAGACCTACGGCGGCGGATTTGGCGGCTA 660
| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 628 CTTCGTGCCATGACGTCATGATCGGAAAATACCGACCTACGGCGGCGGATTTGGCAGCTA 687
Query 661 ACCGGACCAGCGGTTTTGGTTTAACCACAAACATAATAAACGGCGGTTTAGAGTGTGGGA 720
|||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 688 ACCGGACCGGCGGGTTTGGTTTAACCACAAATATAATAAATGGCGGTTTAGAGTGTGGGA 747
Query 721 TTCCTGGAGACGGGCGGGTCAATGACCGGATCGGGTTTTTTCGGAGATATACTGGGCTGT 780
||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 748 TTCCTGGAGACGGACGGGTCAATGACCGAATCGGGTTTTTTCAGAGATATACTGGGCTGT 807
Query 781 TTAATGTAGCAACTGGGCCTAATTTGGACTGTGAAAATCAAAGGCCCTATGCTTAAACAA 840
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 808 TTAAAGTAGCAACTGGGCCGAATTTGGACTGTGAAAATCAAAGGCCTTATGCTTAAACAA 867
Query 841 TCAATTTGGTTGACCC 856
| ||||||||||||||
Sbjct 868 TTAATTTGGTTGACCC 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744576157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5