BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918891
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02380.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1085 0.0
> AT1G02380.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G01960.1);
Has 66 Blast hits to 66 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:477000-478971
FORWARD LENGTH=1121
Length=1121
Score = 1085 bits (587), Expect = 0.0
Identities = 687/736 (93%), Gaps = 3/736 (0%)
Strand=Plus/Plus
Query 4 GAGAAAGTTAGTG--TGGGATGGATCAAATGTTTTCAGGAGAACAAGATCTTGAAGTGGA 61
|||||| |||||| | |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 286 GAGAAACTTAGTGTATAGGATGGATCAAATGTTATCAGGAGAACAAGATCTTGAAGTAGA 345
Query 62 TATTGAAGCTGGTCGATCTGATGTTACACAAGAATCCACATCAGATACTGTTTCAGGCAA 121
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 346 TATTGAAGCTGGTCGATCTGACGTTACACAAGAATCCACATCAGATACTGTTTCAGGCAA 405
Query 122 TGGGGTCTGGAGTGACCGGGTGAATTTCGGTGTGTCTGAAAAGATTGCTGATGATCTGAT 181
||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||
Sbjct 406 TGGGGTCTGGAGTGAACGGGCGAATTTCGGTGTCTCTGAAAAGATTGCTGATGATCTGAG 465
Query 182 CTATCCATTAATGGGAGACGAAAAGCGGGTAGAAACTAGCAGTCAAAGTTTGGATCTTGC 241
||||||||| || |||||||||| || ||||||||||||||||| |||||||||||| |
Sbjct 466 CTATCCATTGATAAGAGACGAAAACCGAGTAGAAACTAGCAGTCAGAGTTTGGATCTTTC 525
Query 242 AGAGATAAAATGCGATAATGGAAAGTTTAAGAAGTCGAGAAAAGCTTCAAAGCCTCCGAG 301
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 526 AGAGAAAAAATGCGGTAATGGAAAGTTTAAGAAGTCGAGAAAAGCTTCAAAGCCTCCAAG 585
Query 302 ACCTCCAAAAGGCCCTTCCTTGAGTGAGAACGACCGTAAGATCATGAGGGACATACAAGA 361
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 586 ACCTCCAAAAGGCCCTTCCTTGAGTGAGAATGACCGTAAGATCATGAGGGACATACAAGA 645
Query 362 GCTAGCTATGAGAAAGCGAGCAAGGATTGAAAGGATGAAAAATTCCCTAAAAAGAATGAA 421
||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 646 GCTCGCTATGAGAAAGCGTGCAAGGATTGAAAGGATGAAAAAGTCCTTAAAAAGGTTGAA 705
Query 422 AGCAACCAAGTCGTCACCATCATCTCCATGCATTAGCATTTTTTCGATGATAATAACAGC 481
|||| ||||| |||||||||||||||||||||||| |||||| || ||||||||||| ||
Sbjct 706 AGCAGCCAAGACGTCACCATCATCTCCATGCATTACCATTTTCTCCATGATAATAACGGC 765
Query 482 TCTATTCTTCGCCTTTCTAGTCTTCCAAGGATTCTCTGCAAGCAGTTCGAGTTTGAGTTC 541
| |||||||||||||||||||||||||||||||||| || ||||||||||| ||| |||
Sbjct 766 TATATTCTTCGCCTTTCTAGTCTTCCAAGGATTCTCCACAGGCAGTTCGAGTATGAATTC 825
Query 542 GGATAAATCACCTGCACCAACTGTTTCACCTAACAACCAATTGATTTCAGTTCACTTGTA 601
||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||
Sbjct 826 GGACAAATCACCTGCACCAACAGTTTCACCTAACAACCAAATGATTTCAGTTCAGTTCTA 885
Query 602 CAATGATTTTGCTCCCGTTGAGCAAACCGATCCCAGCCCGACCACCTCATTCAGGTACAC 661
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 886 CAATGATTTTGCTCCCGTTGAGCAAACCGATCCCAGCCCGACCACCTCATTAAGATACAC 945
Query 662 GAGGAAGCGCATTTCGGGTGCAGAAGAAGAAGACTCGAGAGACGTTACTAGATGAGTTCT 721
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 GAGGAAGCGAATTTCGGGTGCAGAAGAAGAAGACTCGAGAGACGTTACTAGATGAGTTCT 1005
Query 722 CTGTTT-GGTCTTCTT 736
|||||| |||||||||
Sbjct 1006 CTGTTTTGGTCTTCTT 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35716478517
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5