BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918895
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02410.1 | Symbols: | cytochrome c oxidase assembly protein... 1487 0.0
AT3G33103.1 | Symbols: | pseudogene, cytochrome oxidase assemb... 172 4e-42
> AT1G02410.1 | Symbols: | cytochrome c oxidase assembly protein
CtaG / Cox11 family | chr1:490925-492926 FORWARD LENGTH=1176
Length=1176
Score = 1487 bits (805), Expect = 0.0
Identities = 859/886 (97%), Gaps = 0/886 (0%)
Strand=Plus/Plus
Query 2 AAATCATCTCTCTGCAGCCATGTCGTGGTCGAAAGCTTGTAGAGGAACTCGAATTTCTTC 61
|||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 AAATAATTTCTCTTCGGCCATGTCGTGGTCGAAAGCTTGTAGAGGAACTCGAATTTCTTC 189
Query 62 ATATTTAGAGAACCTTCATCGAACATCTCAGTCTCCGAGGACTAGTTTATGCTCTCGTTA 121
|||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 190 ATATTTAGAGAACCTTCATCGAACATCTCAGTATCCAAGGACTATTTTATGCTCTCGTTA 249
Query 122 TTACACTCATGGAGCTTGTAAAGGCAATGAGCATTATCTCCGAAGCAAGAGAGTATTTTG 181
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 250 TTACACTCATGGAGCTTGTAAAAGCAATGAGCATTATCTCCGAAGCAAGAGAGTATTTTG 309
Query 182 GGGAAGTTCTTCTTCATGGAGCTTGAATTCTCACTCTGCTACTGCTAAATCGATGTTAGT 241
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GGGAAGCTCTTCTTCATGGAGCTTGAATTCTCACTCTGCTACTGCTAAATCGATGTTAGA 369
Query 242 TAGTGCCCATCGCCAGTATTCTACGCAATCTCCAACGGAAACCAAATCACAGAAAATGCT 301
|||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 370 TAGTGCCCATCGCCAGTATTCTACTCACTCTCCATCGGAAACCAAATCACAGAAAATGCT 429
Query 302 CTATTACCTCACCGCTGTTGTCTTTGGTATGGTGGGGCTGACTTACGCTGCCGTGCCATT 361
||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 430 CTATTACCTCACCGCTGTTGTCTTTGGTATGGTGGGGTTAACTTACGCTGCTGTGCCATT 489
Query 362 GTATAGAACATTCTGCCAAGCTACTGGATATGGAGGTACTGTTCAACGCAAAGAGACTGT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GTATAGAACATTCTGCCAAGCTACTGGATATGGAGGTACTGTTCAACGCAAAGAGACTGT 549
Query 422 TGAGGAGAAGATTGCTAGGCATTCAGAATCTGGTACCGTCACTGAAAGGGAGATTGTCGT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 550 TGAGGAGAAGATTGCTAGGCATTCAGAATCTGGTACCGTCACTGAAAGGGAGATTGTGGT 609
Query 482 GCAGTTCAATGCTGATGTTGCAGATGGGATGCAATGGAAGTTCACTCCAACACAAAGAGA 541
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 610 GCAGTTCAATGCTGATGTTGCAGATGGGATGCAGTGGAAGTTCACTCCAACACAAAGAGA 669
Query 542 GGTTAGAGTAAAGCCAGGAGAAAGTGCACTCGCTTTTTACACTGCTGAAAACAAAAGTTC 601
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 670 GGTTAGAGTAAAGCCAGGAGAAAGTGCACTCGCATTTTACACTGCTGAAAACAAAAGTTC 729
Query 602 AGCTCCAATAACCGGAGTCTCGACATACAATGTCACTCCCATGAAGGCTGGAGTTTATTT 661
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 730 AGCTCCAATAACCGGAGTCTCGACATACAATGTCACTCCCATGAAGGCAGGAGTTTATTT 789
Query 662 CAACAAGATACAATGTTTTTGCTTTGAGGAGCAGCGACTCCTTCCCGGAGAGCAAATCGA 721
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 790 CAACAAGATACAATGTTTTTGCTTTGAGGAGCAGCGACTCCTTCCTGGAGAGCAGATTGA 849
Query 722 CATGCCGGTCTTCTTCTACATTGATCCTGAGTTTGAGACTGATCCAAGAATGGACGGAAT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CATGCCGGTCTTCTTCTACATTGATCCTGAGTTTGAGACTGATCCAAGAATGGACGGAAT 909
Query 782 CAACAACTTGATATTGTCTTACACTTTCTTCAAAGTGTCAGAGGAAAATACTACAGATAC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 910 CAACAACTTGATATTGTCTTACACTTTCTTCAAAGTGTCAGAGGAAAATACTACAGAGAC 969
Query 842 GGTCAACAATAGCAGCTCTGTTCCAGTTCAAGAAACCAAATAAAAA 887
||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 970 GGTCAACAATAACAACTCTGTTCCAGTTCAAGAAACCAATTAAAAA 1015
> AT3G33103.1 | Symbols: | pseudogene, cytochrome oxidase assembly
protein cox-11-related, blastp match of 82% identity and
9.7e-30 P-value to GP|28301938|gb|AAO38831.1||AC091532 putative
cytochrome c oxidase assembly protein {Oryza sativa (japonica
cultivar-group)} | chr3:13841651-13842464 REVERSE LENGTH=814
Length=814
Score = 172 bits (93), Expect = 4e-42
Identities = 103/108 (95%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 541 AGGTTAGAGTAAAGCCAGGAGAAAGTGCACTCGCTTTTTACACTGCTGAAAACAAAAGTT 600
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 303 AGGTTAGAGTAACGCCAGGAGAAAGTGCACTCGCATTTTACACTGCTGAAAACAAAAGTT 362
Query 601 CAGCTCCAATAACCGGAGTCTCGACATACAATGTCACTCCCATGAAGG 648
|||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 363 CAGCTCCAATAACCGGCGTCTCGACATACAATGTTACTCCCATCAAGG 410
Score = 169 bits (91), Expect = 5e-41
Identities = 91/91 (100%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 729 GTCTTCTTCTACATTGATCCTGAGTTTGAGACTGATCCAAGAATGGACGGAATCAACAAC 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTCTTCTTCTACATTGATCCTGAGTTTGAGACTGATCCAAGAATGGACGGAATCAACAAC 717
Query 789 TTGATATTGTCTTACACTTTCTTCAAAGTGT 819
|||||||||||||||||||||||||||||||
Sbjct 718 TTGATATTGTCTTACACTTTCTTCAAAGTGT 748
Score = 130 bits (70), Expect = 2e-29
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 651 GGAGTTTATTTCAACAAGATACAATGTTTTTGCTTTGAGGAGCAGCGACTCCTTCCCGGA 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 498 GGAGTTTATTTCAACAAGATACAATGTTTTTGCTTTGAGGAGCAGCGACTCCTTCCTGGA 557
Query 711 GAGCAAATCGACATGCCGGT 730
||||| || |||||||||||
Sbjct 558 GAGCAGAT-GACATGCCGGT 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5