BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918899
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02460.1 | Symbols: | Pectin lyase-like superfamily protein... 2464 0.0
> AT1G02460.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:504673-507204 REVERSE LENGTH=1805
Length=1805
Score = 2464 bits (1334), Expect = 0.0
Identities = 1447/1503 (96%), Gaps = 1/1503 (0%)
Strand=Plus/Plus
Query 5 TTTCTAAGCCAAG-AAAATGTTAACTTCTACTTATAATCGCAATCAAATCCTCTGTCTCA 63
||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||| || |||
Sbjct 89 TTTTTAAGCCAAGAAAAATGTTAACTTCTACTTATAATCGCAACCAAGTCCTCGGTTTCA 148
Query 64 TGACACTTATTCTCACATTAGTGTCTCTAACCGAAGCTCGAAACCATCACCACAAAGAGA 123
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 149 TGACACTTATTCTCACATTAATGTCTCTAAGCGAAGCTCGAAACCATCACCACAAAGAGA 208
Query 124 AACGCAAACACAATAACCATAACCACCACTCCTCTAAACCAAAGCCACCCTCTTCCTCCA 183
||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 209 AACACAAACATAATAACCATAACCACCACTCCTCTAAACCAAAGCCACCATCTTCCTCCA 268
Query 184 TCTCTCAGCCTCCTACTCCTCCTCCGGGGCCCCCTGACTCACCCGCACCGTCAGTGTCAC 243
|||||||||||||||||||||||||||| |||||||||||||| ||||||||| || |||
Sbjct 269 TCTCTCAGCCTCCTACTCCTCCTCCGGGTCCCCCTGACTCACCGGCACCGTCACTGCCAC 328
Query 244 CCACACCTTCTGACGAGCCTGGAGATGACAACAACGGAATCTACAACGTTAGAAAGTATG 303
|| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 329 CCTCACCTTCTGACGATCCTGCAGATGACAACAACGGAATCTACAACGTTAGAAAGTATG 388
Query 304 GTGCGGTGGGAGACGGTGAAACCGACGACACTGAAGCATTCAAAATGGCTTGGGACTCAG 363
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 389 GTGCGGTGGGAGACGGTGAAACCGACGACACTGAAGCATTCAAAACGGCGTGGGACTCAT 448
Query 364 CTTGTAACAACGAGAACAACACCGATTCTGTGTTGCTTGTCCCTTACGGCTACACATTCA 423
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 449 CTTGTAACAACGAGAACAACACCGATTCAGTGTTGCTTGTTCCTTACGGCTATACATTCA 508
Query 424 TGATTCAATCAACTATTTTCACCGGTCCTTGCCGCTCTTACCAATTTTTCCAAGTGGATG 483
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 509 TGATTCAATCAACCATTTTCACTGGTCCTTGCCGCTCCTACCAATTTTTCCAAGTGGATG 568
Query 484 GGACCATTGTAACACCCGATGGACCAGAGTCGTGGCCGAGCAATATAAGTAAGAGACAAT 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 GGACCATTGTAACACCCGATGGACCAGAGTCGTGGCCGAGCAATATAAGTAAGAGACAAT 628
Query 544 GGCTTGTGTTCTATAGAGTCAACGGAATGGCTTTGAAAGGCGACGGAGTTATCGACGGCC 603
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 629 GGCTTGTGTTCTATAGAGTCAACGGAATGGCTTTGAAAGGCGAAGGAGTTATCGACGGCA 688
Query 604 GGGGACAAAAATGGTGGGATCTTCCCTGTAAACCTCACCGGAGTGTCAACAAATCTGCTA 663
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 689 GGGGACAAAAGTGGTGGGATCTTCCCTGTAAACCTCACCGGAGTGTCAACAAATCAGCAA 748
Query 664 TTGTTGCCGGTCCTTGCGATAGCCCCATTGCTTTGAGGTTCTTTATGAGCTCGAATCTAA 723
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TTGTTACCGGTCCTTGCGATAGCCCCATTGCTTTGAGGTTCTTTATGAGCTCGAATCTAA 808
Query 724 GGGTGGAAGGTCTACACATAAAAAACAGCCCGCAGTTTCATTTCAGATTCGACGGATGTC 783
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 GGGTGGAAGGTCTACAGATAAAAAACAGCCCGCAGTTTCATTTCAGATTCGACGGATGTC 868
Query 784 AAGGAGTTCACGTCGAGTCCCTTCACATCACTGCTCCGCCGTTAAGTCCCAACACCGACG 843
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 869 AAGGAGTTCACGTTGAGTCCCTTCACATCACTGCTCCACCGTTAAGTCCCAACACCGATG 928
Query 844 GCATCCACATCGAAAACTCTAACTCCGTTACCATCTACAACTCCATCATCTCCAATGGAG 903
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 929 GGATCCACATCGAAAACTCTAACTCCGTTACCATCTACAATTCCATTATCTCCAATGGAG 988
Query 904 ATGATTGTGTATCGATTGGCTCCGGATCATACGATGTTGATATACGGAATCTCACTTGTG 963
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 989 ATGATTGTGTATCGATTGGCTCCGGATCATACGACGTTGATATACGGAATCTAACTTGTG 1048
Query 964 GACCCGGTGGCCATGGAATTAGTATCGGAAGTTTGGGCAATCACAACTCACGAGCATGCG 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1049 GACCCGGTGGCCATGGAATTAGTATCGGAAGTTTGGGCAATCACAACTCACGAGCATGTG 1108
Query 1024 TCTCAAATATAACGGTTAGAGACTCGGTGATAAAATACTCTGACAATGGAGTTCGGATCA 1083
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 1109 TCTCAAATATAACGGTTAGAGATTCGGTCATAAAATACTCTGACAATGGAGTTAGGATCA 1168
Query 1084 AAACATGGCAAGGTGGGTCCGGTTCGGTCTCAGGCGTGACGTTCAACAACATCCACGTGG 1143
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1169 AAACATGGCAAGGTGGGTCCGGTTCGGTCTCAGGCGTGACATTCAACAACATCCACGTGG 1228
Query 1144 ACTCAGTCCGTAACCCGATAATTATTGACCAATACTATTGCATGACCAAAGATTGTGCTA 1203
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1229 ACTCAGTCCGTAACCCGATAATTATTGACCAATACTATTGTATGACCAAAGATTGTGCTA 1288
Query 1204 ACAAAACATCTGCGGTTTTTGTATCTGATATTGCTTACCAAGGCATCAAAGGAACTTACG 1263
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1289 ACAAAACATCAGCGGTTTTTGTGTCTGATATTGCATACCAAGGCATCAAAGGAACTTACG 1348
Query 1264 ATATTCGAAGTCCCCCGATGCATTTTGGATGCAGCGACGCAATACCATGCACAAATCTAA 1323
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1349 ATATTCGAAGTCCCCCGATGCATTTTGGATGCAGCGATGCAGTACCATGCACAAATCTAA 1408
Query 1324 CTCTTTCCGACATCGAATTGCTTCCTGCCAAAGGCGAATTCGTTTTGGATCCGTTTTGTT 1383
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1409 CTCTTTCCGACATCGAATTGCTTCCTGCCAAAGGCGAAATCGTTTTGGATCCGTTTTGTT 1468
Query 1384 GGAATGCTTATGGAATTGCGGAAGAGCTTTCGATTCCTCCAGTTTGGTGTCTCATGTCCG 1443
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1469 GGAATGCTTATGGAATTGCGGAAGAGCTTTCGATTCCTCCGGTTTGGTGTCTCATGTCCG 1528
Query 1444 ATCCTCCCAAGGGGTTGCAAGGATCTCTTGTTGACAAGTGTGGTTCATCGTGATTTGCTT 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1529 ATCCTCCCAAGGGGTTGCAAGGATCTCTTGTTGACAAGTGTGGTTCATCGTGAGTTGCTT 1588
Query 1504 CAT 1506
|||
Sbjct 1589 CAT 1591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74798812050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5