BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918906
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02550.1 | Symbols: | Plant invertase/pectin methylesterase... 1142 0.0
> AT1G02550.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:536483-537211 FORWARD
LENGTH=729
Length=729
Score = 1142 bits (618), Expect = 0.0
Identities = 692/729 (95%), Gaps = 0/729 (0%)
Strand=Plus/Plus
Query 21 ATGAAGAAGTCATCACCATTGctctgtttctctcttgctctgttttctctcctatcatct 80
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1 ATGAAGAAGTCATCACCATTGCTCTGTTTCTCTCTTGCTTTGTTTTCTCTCCTCTCATCT 60
Query 81 ccttcctcttccgctcgtatcttctcctccgttgtcccctccgccgctccttctcccgcc 140
|||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 61 CCTTCCTCTTCCACTCGTATAATCTCCTCCATTGTCCCCTCCGCCGCTCCTTCTCCCGCC 120
Query 141 gTATCCACCACCTCCGACGGGGGCGTAGATGAAACCGATTTCTCCGCCTTCACGCAATGG 200
||| || ||||| ||||||| | |||||| |||| |||||||||||||||||||||||||
Sbjct 121 GTAGCCCCCACCACCGACGGCGACGTAGACGAAAACGATTTCTCCGCCTTCACGCAATGG 180
Query 201 AACATTTTAAACCTAACTGACCTCAAAAGCACCTTTAAAAACCTCCCGGATCTCTCTAAG 260
||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 181 AACATTTTAAACCTAACGGACCTTAAAAGTACCTTTAAAAACCTCCCGGATTTCTCTAAG 240
Query 261 CTCAACATCTCATCCCTCCACGTGTCACCCGCCGTTGGCTACGTCTGCTCTAACACCGAC 320
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 CTCAACATCTCATCCCTTCACGTGTCACCCGCCGTTGGCTCCGTCTGCTCTAACACCGAC 300
Query 321 TACGCTGCCGAATGCATCGTCTCAATCCTCCCACTCCTCCGCGACTTCCGCAAATTCGAG 380
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TACGCCGCCGAATGCATCGTCTCAATCCTCCCACTCCTCCGTGACTTCCGCAAATTCGAG 360
Query 381 CCAAAACCCATCGACGTCCTTCGAATGGAGATGAGTGCGCTCTACGAGAAAGCTAACGCC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAAAACCCATCGACGTCCTTCGAATGGAGATGAGTGCGCTCTACGAGAAAGCTAACGCC 420
Query 441 ACGCTCGACTTAGCCAAGCGTCTCATCGTTGACCAGTCAACGCCGCGTGACGTGGCTGAT 500
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 421 ACGCTTGACTTAGCCAAGCGTCTCATCGTGGATAAGTCAACGCCGCGTGACGTGGCTGAT 480
Query 501 GTTTTGGACTTATGTGTCGATAACTACGAGTCGCTTCTCGATGATCTCAAAGATGCTTCC 560
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GTATTGGACTTGTGTGTCGATAACTACGAGTCGCTTCTCGATGATCTTAAAGATGCTTCC 540
Query 561 GTAGCCGTCGATGATGGAGACTTTGGACGGCTCGAGAGTGTGGTGAGTGCTGCGATCGCT 620
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 541 GTAGCCGTCGATGATGGAGACTTTGAACGGCTCGAGAGTGTGGTCAGTGCTGCGATCGCT 600
Query 621 GATGTGGTGACTTGCTCGGACGCGTTCACTGAGTCGTCGGAGCTTGAGTCGCCGATGGTT 680
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 601 GATGTGGTGACTTGCTCTGACGCGTTCGCTGAGTCGTCGGAGCTTGAGTCGCCGATGGCT 660
Query 681 AACGTTGATGCTTTTCTTAAGAAGCTTTGTAGTAATGTCTTGGCTATTTCTCAGATGATC 740
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 661 AACGTTGATGATTTTCTTAAGAAACTTTGTAGCAATGTCTTGGCTATTTCTCAGATGATC 720
Query 741 CATATGTAA 749
|| ||||||
Sbjct 721 CACATGTAA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5