BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918907
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded ... 1607 0.0
> AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded
CLP protease 5 | chr1:537860-540109 FORWARD LENGTH=1341
Length=1341
Score = 1607 bits (870), Expect = 0.0
Identities = 916/938 (98%), Gaps = 4/938 (0%)
Strand=Plus/Plus
Query 1 CAAATTGACCAACAAGAATAATGGCTCATGCTTGCGTCTCTACATCGGCTTCTTCTCTCA 60
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CAAATTGA-TAACAAGAA-AATGGCTCATGCTTGCGTCTCTACATCGGCTTCTTCTCTCA 180
Query 61 GATTCACAGCTGGATTCGTCTCCGCTAGTCCTAATGGTTCCTCTTTCGATTCTCCCAAGC 120
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 181 GATTCACAGCTGGATTCGTCTCCGCTAGTCCCAATGGCTCCTCTTTCGATTCTCCCAAGC 240
Query 121 TTTCTCTTCCTTTCGAGCCTCTTCGTTCAAGGAAGACGAAGAAGTTAGTTAGCGATAGAA 180
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 241 TTTCTCTTCCTTTCGAGCCTCTCCGTTCAAGGAAGACGAATAAGTTAGTTAGCGATAGAA 300
Query 181 AGAATTGGAAGAATTCAACTCCGAAAGCTGTATATTCCGGCAATCTCTGGACACCGGAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAATTGGAAGAATTCAACTCCGAAAGCTGTATATTCCGGCAATCTCTGGACACCGGAGA 360
Query 241 TTTCTTCTCCTCAAGGAGTTTGGTCCATTAGAGATGATTTACAAGTCCCTTCTTCGCCGT 300
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCCGTCTCCTCAAGGAGTTTGGTCCATTAGAGATGATTTACAAGTCCCTTCTTCGCCGT 420
Query 301 ATTTTCCTG-TGTATGCTCAAGGACAAGGACCACCTCCTATGGTGCAAGAACGTTTCCAG 359
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTTTCCTGCT-TATGCTCAAGGACAAGGACCACCTCCTATGGTGCAAGAACGTTTCCAG 479
Query 360 AGTATCATTAGTCAGCTCTTCCAATATAGGATTATTCGCTGTGGTGGTGCTGTGGATGAT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTATCATTAGTCAGCTCTTCCAATATAGGATTATTCGCTGTGGTGGTGCTGTGGATGAC 539
Query 420 GATATGGCAAATATAATTGTAGCTCAACTTCTGTATCTTGATGCTGTTGATCCTACTAAG 479
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 GATATGGCAAACATAATTGTAGCTCAACTCCTGTATCTTGATGCTGTTGATCCTACTAAG 599
Query 480 GATATTGTCATGTATGTTAATTCTCCTGGTGGATCAGTTACAGCTGGCATGGCTATATTC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATATTGTCATGTATGTTAATTCTCCTGGTGGATCAGTTACAGCTGGCATGGCTATATTC 659
Query 540 GATACTATGAGGCATATCCGGCCTGATGTGTCCACTGTTTGTGTCGGTCTAGCTGCTAGT 599
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 GATACTATGAGGCACATCCGGCCTGATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAGT 719
Query 600 ATGGGAGCTTTTCTGCTTAGTGCTGGAACCAAAGGGAAAAGATACAGTCTACCGAACTCA 659
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 720 ATGGGAGCTTTTCTGCTTAGTGCTGGAACCAAAGGAAAAAGATACAGTCTACCAAACTCA 779
Query 660 AGGATAATGATCCATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGGATAATGATCCATCAGCCGCTTGGTGGAGCTCAAGGTGGCCAAACCGACATTGACATT 839
Query 720 CAGGCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCGTACCACACT 779
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 840 CAGGCAAATGAAATGCTGCATCACAAGGCAAACCTAAACGGTTACCTCGCATACCACACT 899
Query 780 GGTCAAAGCCTGGAGAAGATAAACCAGGACACAGACCGTGATTTCTTCATGAGTGCTAAA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 900 GGTCAAAGCCTGGAGAAGATAAACCAGGACACAGACCGTGATTTCTTCATGAGTGCCAAA 959
Query 840 GAAGCAAAAGAGTATGGACTTATCGACGGTGTTATCATGAACCCTCTTAAAGCTCTCCAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAAGCAAAAGAGTATGGACTTATCGACGGTGTTATCATGAACCCTCTTAAAGCTCTCCAG 1019
Query 900 CCACTTGCAGCAGCTTAAACGCCTGAAGGTAGTGGTTC 937
|||||||||||||||||| ||||| |||||||||||||
Sbjct 1020 CCACTTGCAGCAGCTTAATCGCCTAAAGGTAGTGGTTC 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45813542064
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5