BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918918
Length=2190
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02660.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 3293 0.0
> AT1G02660.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:571955-574981 REVERSE LENGTH=2609
Length=2609
Score = 3293 bits (1783), Expect = 0.0
Identities = 2062/2193 (94%), Gaps = 34/2193 (2%)
Strand=Plus/Plus
Query 12 TTTATTACGATGGACAGTTTGTGTTTTAATAGCGGTTTACACGGTGTAATTCCAGCGATC 71
||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 227 TTTCTTTCGATGGACAGTTTGTGTTTGAATAGCGGTTTACACGGTGTAATTCCAGCGATC 286
Query 72 ACTGCGGTTGGAAACGG-TGTAAGCGGTGGAGTTGTTGAAGTCCGAGCAACTGCAACGGC 130
||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 287 ACTGCGGTTGGAAACGGCGGT-TGCGGTGGAGTTGTTGAAGTCCGAGCAACTGCGTCGGC 345
Query 131 ACCATCGCAAAAAAGAGGACCTTTTGGCTTCTCATTTAAGTACCCATTGACGCCGTTTTG 190
|||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 346 ACCATCGCAAAAAAGAGGACCTTTCGGGTTCTCATTTAAGTACCCACTGACGCCGTTTTG 405
Query 191 GTCTCGCGGCGGTGGAGGAGGAATTGCGTCGAGGAGACGAAGTGGGTTGTGTTTAGACGA 250
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 406 GTCTCGCGGCGGTGGAGGAGGAATTGCGTCGAGGAGACGAAGTGGATTGTGTTTAGACGA 465
Query 251 CGCCGTTTTGGTTGATTCTGGCGATTCGAGAAAGCCGATCGCGGAGGAGACGGCGGTGGA 310
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CGCCGTTTTGGTTGATTCCGGCGATTCGAGAAAGCCGATCGCGGAGGAGACGGCGGTGGA 525
Query 311 AATGGATACCGAGAGGCGAAATGGGAGCTGGGTTTTGAAGATCTTGGATGTACAATCTAT 370
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AATGGATACGGAGAGGCGAAATGGGAGCTGGGTTTTGAAGATCTTGGATGTACAATCTAC 585
Query 371 GTGGagagata-g-agaagaagaagatgaagatgaagatgatgatgatgatgatgaagaa 428
||||| | | | | ||||||||||||||| ||||||| | | || | ||||| || | |
Sbjct 586 GTGGA-A-ACACGAAGAAGAAGAAGATGATGATGAAG-T-A-GA--A-GATGAAGACGGA 637
Query 429 gatgaagaCGAGGATGTTGAATCAGACGACGCCGTATTAGCTGAAGATGATGGTGGTTGC 488
|| ||||||||||| ||||||| ||||||||||||| || |||||||||||||||| |||
Sbjct 638 GACGAAGACGAGGAGGTTGAATTAGACGACGCCGTAGTATCTGAAGATGATGGTGGATGC 697
Query 489 GATGTATGTTCGA-TTTTGGAAGATGATGGTGACGAAGCAAACAAATTTCAGCTTGATAG 547
||||||||||| | |||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 698 GATGTATGTTC-AGTTTTGGAAGATGATGGCAACGAAGCAAACAAATTTCAACTCGATAG 756
Query 548 AGAATCGTTCACCAAATTGCTGAGGAGGGTTACGTTACCAGAATCAAAACTCTATGCCCA 607
|||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 757 AGAATCGTTCTCCAAATTGCTAAGGAGGGTTACGTTACCCGAATCAAAACTCTATGCCCA 816
Query 608 AATGTCGTATTTGGGAAACTTGGCTTATTCAATTTCAAAAATCAAGCCTGCGAATCTTTC 667
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 817 ACTATCGTATTTGGGAAACTTGGCTTATTCAATTTCAAAAATCAAGCCTGCGAATCTGTC 876
Query 668 GAAATATTACGGCCTGAGATTTGTAACTTCATCAGCTGAGAAAACAGAATCTGCGTTAAA 727
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 877 GAAATATTACGGCCTGAGATTTGTAACTTCATCAGCTGAGAAAACAGAATCGGCGTTAAA 936
Query 728 AGCTGGGAATGGTGAGGTTTCAGGAGAGACTAAGCCAATTGAGgaagaagaagaagctaa 787
||||| ||||||||| |||||||| |||||||||||||||| ||||| |||||||| |
Sbjct 937 AGCTGAGAATGGTGAAGTTTCAGGTGAGACTAAGCCAATTGTGGAAGCAGAAGAAG---A 993
Query 788 agatgaagaagaagaagaagagaagaagaaagGTCGCAAGATTAGTGCTTCTGCTGCATA 847
|| ||||||||||| || | |||| | ||| ||||||||||||||||||||||||||||
Sbjct 994 AGTTGAAGAAGAAG-AG-A-AGAA-CA-AAA-GTCGCAAGATTAGTGCTTCTGCTGCATA 1047
Query 848 TGAGATTGTTGCATCAGCTGCTTCTTACCTGCACTCCCGTACCAACAACATACTTCCTTT 907
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1048 TGAGATTGTTGCATCAGCTGCTTCTTACCTTCACTCTCGTACCAACAACATACTTCCTTT 1107
Query 908 CAATTCTTCATCGAAAG-C------T--GACAAAAATGATGTAAATTTGGCAAATGCGGA 958
||| ||||||||||||| | | |||||| |||||||||||||| | ||||||||
Sbjct 1108 CAACTCTTCATCGAAAGCCGAGAATTCGGACAAACATGATGTAAATTTGACTAATGCGGA 1167
Query 959 GTCATCATCAGATGTTGCTTATTCTGTTACTTCTGTTGTTGCTGCTGAGGAAGATGTGAA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GTCATCATCAGATGTTGCTTATTCTGTTACTTCTGTTGTTGCTGCTGAGGAAGATGTGAA 1227
Query 1019 GCAAGCTGTTGCAGACGATTTGAAATCGACGATTTCTTCTCCCTGCGATTGGTTTATATG 1078
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1228 GCAAGCAGTTGCAGACGATTTGAAATCCACGATTTCGTCTCCCTGCGATTGGTTTATATG 1287
Query 1079 TGATGATGATCAGAGTCACACTAGATTTGTTGTGATTCAGGGATCTGAATCTCTAGCTTC 1138
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1288 TGATGATGATCAGAGTCACACTAGATTCGTTGTGATTCAGGGATCTGAATCTCTAGCTTC 1347
Query 1139 TTGGCAAGCAAATTTACTCTTTGAGCCTATTGAATTTGAGGGACTTGGTGCGATCGTACA 1198
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1348 TTGGCAAGCAAATTTACTCTTTGAGCCTATTGAATTTGAGGGCCTTGGTGCGATCGTACA 1407
Query 1199 CAGAGGAATATATGAAGCTGCAAAAGGAATGTATGAACAAATGCTACCTGAAGTTAAAGC 1258
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 CAGAGGAATATACGAAGCTGCAAAAGGAATGTATGAACAAATGCTACCTGAAGTTAAAGC 1467
Query 1259 CCATATCAAAACCCACGGGACCAACGCTAAATTCCGTTTCACCGGTCATTCATTAGGTGG 1318
|||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1468 CCATATTAAAACCCATGGGACCAGCGCTAAATTCCGTTTCACCGGTCATTCATTAGGTGG 1527
Query 1319 AAGCTTATCGCTATTACTAAACCTCATGTTACTCGTTCGAGGCGAAGTACCTGCTTCTTC 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1528 AAGCTTATCGCTATTACTAAACCTCATGTTACTCGTTCGAGGCGAAGTACCTGCGTCTTC 1587
Query 1379 TTTACTTCCGGTTATAACATATGGTGCACCATTTGTGCTATGTGGAGGCGACCGTCTTCT 1438
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1588 TTTACTTCCGGTTATAACATATGGTGCACCATTTGTGCTATGTGGAGGTGACCGTCTTCT 1647
Query 1439 TAAAAAACTCGGATTGCCTAAAAGCCATGTTCAAGCTGTCATAATGCACCGTGACATTGT 1498
||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 1648 TAAGAAACTCGGATTGCCTAAAAGCCATGTTCAAGCTATTGTTATGCACCGTGACATTGT 1707
Query 1499 CCCGAGAGCTTTTTCTTGTAACTATCCGTACCATGTTGCCGAGCTTCTCAAAGCTGTTAA 1558
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1708 TCCGAGAGCTTTTTCTTGTAACTATCCGTACCATGTTGCTGAGCTTCTCAAAGCTGTTAA 1767
Query 1559 TGGAAACTTCCGTAGCCATCCTTGTCTTAACAAACAGAGTATGTTGTATTCTCCGATGGG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 TGGAAACTTCCGTAGCCATCCTTGTCTTAACAAACAGAGTATGTTGTATTCTCCGATGGG 1827
Query 1619 CGAGCTTCTGATTCTTCAACCAGATGAGACATTCTCTCCTGGACATGAACTTCTTCCTCC 1678
|||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |
Sbjct 1828 CGAGCTTCTGATTCTTCAACCAGATGAGACATTCTCCCCCGGGCATGAACTTCTTCCTTC 1887
Query 1679 CGGGGACGGTTTATATCTTCTAAC-AGGCGATTTCGAATCGCCGAATAATGAAGATTCTG 1737
||| |||||||||| |||||||| || ||||| ||||||||| ||| ||||||||| |
Sbjct 1888 CGGAAACGGTTTATACCTTCTAACTAGT-GATTTTGAATCGCCGGATATTGAAGATTCGG 1946
Query 1738 AGGAGGAACGGTTAAGAGCCGCGCAGACGGTTTTCTTAAACACACCGCATCCTCTTGACA 1797
| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1947 ATGAGGAGCGGTTAAGAGCCGCGCAGACGGTTTTCTTGAACACCCCGCATCCTCTCGACA 2006
Query 1798 TACTCAGCGACAGATCGGCTTATGGGTCCAGTGGAACAATCCAAAGGGACCATGATATGA 1857
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2007 TTCTCAGCGACAGATCGGCTTATGGGTCCAGCGGAACAATCCAAAGAGACCATGATATGA 2066
Query 1858 ACTCGTATCTGAAAGCGGTTAGGAGTGTAATAAGAAAAGAAGTGAATCAGATAAGGAGAG 1917
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2067 ACTCGTATCTGAAAGCGGTTAGGAGTGTAATAAGAAAGGAAGTGAATCAGATAAGGAGAG 2126
Query 1918 CGAAAAGGGAGCATCGCCGGAGTCTCTGGTGGCCAATTCTGGTGGCTAGAGAAAGTGGAA 1977
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2127 CAAAAAGGGAGCATCGCCGGAGTCTTTGGTGGCCAATTCTGGTGGCTAGAGAAAGTGGAA 2186
Query 1978 GCTCGGGGATTGCAATCAGTAACGGCCAAATCAACAGTCAGGATTTCTCTGGGATGATGA 2037
|||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 2187 GCTCAGGGATTGCGGTCAGTAACGGCCAAATCAACGGTCAGGATTTCTCCGGGATGATGC 2246
Query 2038 AGACAGGAAGAAAGTCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGT 2097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2247 AGACAGGAAGAAAGTCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGT 2306
Query 2098 TGATCGTTGTTATGTTGTTTCCGGTGAAGTTGTTGTTCCTTGGAGCTTTCAACGTCTTTA 2157
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2307 TGATCGTTGTTATGTTGTTTCCGGTTAAGTTGTTGTTCCTTGGAGCTTTCAACGTCTTTA 2366
Query 2158 GTTTCCGTTGAAAAGTTTCTTTTGGCGGGTTAT 2190
|||||||||||||||||||||||||||||||||
Sbjct 2367 GTTTCCGTTGAAAAGTTTCTTTTGGCGGGTTAT 2399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108633979380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5