BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918920
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 841 0.0
AT4G02170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 148 4e-35
> AT5G38700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten
leaves visible, petal differentiation and expansion stage,
LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1);
Has 64 Blast hits to 64 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr5:15489594-15490399 FORWARD LENGTH=806
Length=806
Score = 841 bits (455), Expect = 0.0
Identities = 525/559 (94%), Gaps = 4/559 (1%)
Strand=Plus/Plus
Query 22 ATGGGGGAATCAAAGAAGAAAAGCAGATCAATGGCAACACAAAGAGCTTGGAGTCTTGTG 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 ATGGGGGAATCAAAGAAGAAAAGCAGATCAATGGCAACACAAAGAGCTTGGAGTCTTGTG 156
Query 82 AGAATGGCTCTTCTATGGGGAAGAAAAGGTGGAATCTTCAAGAGATGGCACATGTTCGAG 141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 157 AGAATGGCTCTTCTATGGGGAAGAAAAGGTGGAATCTTCAAGAGATGGCACATGTTTGAG 216
Query 142 CTCCGCAACTTGTTTTCCAAGCATCTCAGAGCCCTAGCTCATCATAATAGCCTTGACAAC 201
||||| |||||||| ||||||||||||| ||||||| ||||||||| ||| ||||||||
Sbjct 217 CTCCGTAACTTGTTCTCCAAGCATCTCAAAGCCCTAAATCATCATAACAGCGTTGACAAC 276
Query 202 GACCGTTATATCTCACGTTACGGCGAGAAACAGCTCTCTTTCGACGAGACGCCCATCTTT 261
|||||||| || |||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 277 AACCGTTATCTCACACGTTACGGCGAGAAACAGCTTTCTTTCGACGAGACGCCAATATTT 336
Query 262 AACGTTAAGATGCATCGTCCTGCATCCATGAGGTTCCTCTTGCCTTGCATTGCTCCTCCC 321
|||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 337 AACGTTAAAATGCATCGCCCTACATCCATGAGGTTCCTCTTGCCTTGCATTGCTCGTCCC 396
Query 322 GTTGACTTTGACTACGACTTCGAATTGGATTGT-C--AAGATGATACTGACGATGTTAGA 378
| ||||||||||||||| |||||||||||| || | |||||||||||||||||||||||
Sbjct 397 GCTGACTTTGACTACGATTTCGAATTGGATGGTACTCAAGATGATACTGACGATGTTAGA 456
Query 379 TCCTACGGCTACTACGATGGTTCTTGTAATGAGAAATGTGATCGTTCGGCTAATGATGAT 438
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 457 TCCTACGGCTACTACGATGGTTCTTGTAATGAGAAATGTGATCGTTCGGCGAATGATGAT 516
Query 439 CAAGAAGTGGAAGGAGAGAAGGGTGTTGATGTGAGAGCAGAGGAGTTCATTGCTAAATTC 498
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 517 CAAGAAGAGGAAGAAGAGAAGGGTGTTGATGTGAGAGCAGAGGAGTTCATTGCTAAGTTC 576
Query 499 TATGAGCAGATGAAGTTGCAGAGACAAATCTCTTATTTGCAATACAAGGAACACAACGAA 558
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 577 TATGAGCAGATGAAGTTACAGAGGCAAATCTCTTATTTGCAATACAAAGAACACAACGAC 636
Query 559 GTCGTATGATGAGT-ATCA 576
|||||||||||| | ||||
Sbjct 637 GTCGTATGATGATTTATCA 655
> AT4G02170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G38700.1);
Has 53 Blast hits to 53 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:958049-958641
FORWARD LENGTH=593
Length=593
Score = 148 bits (80), Expect = 4e-35
Identities = 280/369 (76%), Gaps = 43/369 (12%)
Strand=Plus/Plus
Query 57 AACACA-AAGAGCTTGGAGTCTTGTG-AGAATGGCTCTTCTATGGGGAAGAAAAGGTGGA 114
|||||| || ||| |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 119 AACACATAA-AGCATGGAGTCTCATGAAG-ATGGCTCTTCTATGGGGAAGAAAAGGTGGA 176
Query 115 ATCTTCAAGAGATGGCACAT-GTTCGAGCTCCGCAACTTGTT-TTCCAAGCATCTCAGAG 172
| ||||| | ||||| ||| |||||| || || | |||||| ||| |||||||||| ||
Sbjct 177 GTTTTCAAAAAATGGC-CATTGTTCGAACTACGTAGCTTGTTCTTC-AAGCATCTCAAAG 234
Query 173 CCCTAGCTCATCATAATAGCCTTGACAACGACCGTTATATCTCACGTTACGGCGAGAAA- 231
|||||||||||||| |||| | || ||||||||| | ||| | ||||
Sbjct 235 CCCTAGCTCATCATCATAG--TA-ACGGTGACCGTTAT-T---ACG----G---AGAACG 280
Query 232 C-AGCTCTC-TTTCGACGAGACGCCCATCTTTAACGTTAAGA------TGCATCGTCCTG 283
| |||| || ||| || || ||||| | |||||||| |||| ||||| |||||
Sbjct 281 CCAGCTTTCCTTT-GATGAAACGCCGTTATTTAACGTCAAGAAGAAGATGCATTGTCCTA 339
Query 284 CATC--C-ATGAGGTTCCTC-T--TGCCTTGCATTGCTCCTCCCGTTGACTTTGACTACG 337
| || | |||||||||||| | | || ||| ||||||||||||| || |||||||| |
Sbjct 340 CTTCGTCTATGAGGTTCCTCCTCCTCCCCTGCTTTGCTCCTCCCGTAGATTTTGACTATG 399
Query 338 ACTTCGAATTGGATTGTCAAGATGATACTGACGATGTTAGA-TCCTACGGCTACTACGAT 396
|||| ||| |||| |||||||| || | ||||| || | | || ||||| | ||||||
Sbjct 400 ACTTTGAAATGGACGGTCAAGATTATTCCGACGAGGT-ACAATCGTACGG-T--TACGAT 455
Query 397 GGTTCTTGT 405
| ||||||
Sbjct 456 GAATCTTGT 464
Score = 148 bits (80), Expect = 4e-35
Identities = 107/120 (89%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 447 GGAAGGAGAG-AAGGGTGTTGATGTGAGAGCAGAGGAGTTCATTGCTAAATTCTATGAGC 505
||||| |||| ||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 467 GGAAGAAGAGAAAGGG-GTGGATGTGAGAGCAGAGGAGTTCATTGCTAAGTTCTATGAGC 525
Query 506 AGATGAAGTTGCAGAGACAAATCTCTTATTTGCAATACAAGGAACACAACGAAGTCGTAT 565
|||| ||||||||||||||| | ||||||||| ||||||| |||||||||| | |||||
Sbjct 526 AGATCAAGTTGCAGAGACAAGTGTCTTATTTGAAATACAAACAACACAACGACGCCGTAT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28281824761
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5