BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918924
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02690.2 | Symbols: IMPA-6 | importin alpha isoform 6 | chr1... 1783 0.0
AT4G02150.1 | Symbols: MOS6, ATIMPALPHA3, IMPA-3 | ARM repeat s... 785 0.0
> AT1G02690.2 | Symbols: IMPA-6 | importin alpha isoform 6 | chr1:584260-587219
FORWARD LENGTH=1940
Length=1940
Score = 1783 bits (965), Expect = 0.0
Identities = 1076/1130 (95%), Gaps = 5/1130 (0%)
Strand=Plus/Plus
Query 1 TTGATTCGATTAAGCTCTACCATGTCTTATAAACCGAGTGCGAAGACTGAGGTTCGTCGG 60
|||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |||
Sbjct 118 TTGATTCGATTAAGCT-AACCATGTCTTACAAACCAAGCGCGAAGACTGAGGTTCGCCGG 176
Query 61 AACAGGTATAAGGTATCTGTGGACGCCGATGAAGGTCGCCGGAGACGGGAGGATAACATG 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AACAGGTATAAAGTATCTGTGGACGCCGATGAAGGTCGCCGGAGACGGGAGGATAACATG 236
Query 121 GTGGAGATCCGGAAGAACAAGAGAGAGGAGAACTTGCAGAAGAAGCGGCGTGAAGGTTTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GTGGAGATCCGGAAGAACAAGAGAGAGGAGAACTTGCAGAAGAAGCGGCGTGAAGGTTTT 296
Query 181 ACTCCTTCCATGGGGTCGCAGCTAGGGCAGGATTTCTCCTCGTCTCTTCCTACGGAAAAG 240
| ||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||| |
Sbjct 297 AATCCTTCCATGGCGTCACAGCCAGGGCAGGATTTCTCCTCGTCTCTCCCTACGGAAACG 356
Query 241 AGATTGGAGAATATACAACAGATGATTGCTGGAGTAATGTCAGAGGATAGAAACATACAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 357 AGATTGGAGAATATACAACAGATGATTGCTGGAGTAATGTCAGAGGATAGAGACTTACAA 416
Query 301 CTGGAGGCGACGGCTGGCTTCAGGAAATTGCTTTCAATTGAGCGTAACCCTCCGATCAAT 360
|||||||||||||| ||||||||| |||||||||||||||||| || ||||| ||||||
Sbjct 417 TTGGAGGCGACGGCTAGCTTCAGGAGATTGCTTTCAATTGAGCGAAATCCTCCAATCAAT 476
Query 361 GAAGTTGTTCAATCTGGTGTTGTTCCTCGCATTGTGCAATTTCTTTCCAGGGATGACTTC 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 477 GAAGTTGTTCAATCTGGTGTTGTTCCTCACATTGTGCAATTTCTTTCCAGGGATGACTTC 536
Query 421 ACTCAACTTCAGTTTGAGGCAGCTTGGGCGCTTACCAATATCGCTTCAGGGACATCTGAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACTCAACTTCAGTTTGAGGCAGCTTGGGCGCTTACCAATATCGCTTCAGGGACATCTGAG 596
Query 481 AACACTAAAGTCATTATTGATAGTGGGGCTGTCCCTTTATTCGTCAAACTTCTTAGTTCT 540
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 597 AACACTAGGGTCATTATTGATAGTGGTGCTGTCCCTTTATTCGTCAAACTTCTTAGTTCT 656
Query 541 GCAAGTGATGAAGTCCGAGAACAGGCTGTCTGGGCATTGGGAAACGTTGCTGGTGACTCG 600
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 657 GCAAGTGAGGAAGTTCGAGAACAGGCTGTATGGGCATTGGGAAACGTTGCTGGTGACTCG 716
Query 601 CCAAAGTGCCGTGATCATGTCCTAAGTTGCGAGGCCATGATGTCTCTTTTGGCTCAATTC 660
||||| || |||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 717 CCAAAATGTCGTGATCATGTCCTAAGTTGTGAGGCTATGATGTCTCTTCTGGCTCAATTC 776
Query 661 AATGAGCATTCAAAGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCTGC 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CATGAGCATTCAAAGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCTGC 836
Query 721 AGAGGGAAGCCGCAGCCTGCATTTGAACAG-A--CAAAAGCAGCTTTACCAGCTCTTGAG 777
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 837 AGAGGGAAGCCGCAGCCTGCATTTGAACAGCAGACAAAAGCAGCTTTACCAGCTCTTGAG 896
Query 778 CGCCTTCTGCATTCAACCGACGAAGAAGTTCTCACAGATGCATCCTGGGCTCTCTCATAT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CGCCTTCTGCATTCAACCGACGAAGAAGTTCTCACAGATGCATCCTGGGCTCTCTCATAT 956
Query 838 CTATCTGATGGTACAAACGAGAAAATACAAACTGTTATCGACGCTGGCGTCATACCTCGT 897
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 957 CTCTCTGATGGTACAAACGAGAAAATACAAACTGTTATCGACGCTGGTGTCATCCCTCGC 1016
Query 898 CTTGTTCAGCTCTTAGCTCATCCATCACCCTCAGTTCTGGTTCCAGCTCTCCGTACCATT 957
|||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||
Sbjct 1017 CTTGTTCAGCTCTTGGCTCATCCATCGCCCTCAGTTCTGATTCCAGCTCTCCGTACAATT 1076
Query 958 GGTAATATTGTAACCGGAGATGATCTTCAGACTCAGGAGGTTATTAACAGTCAAGCGCTT 1017
||||| |||||||||||||||||| |||||||||||| |||||||| |||||||||||||
Sbjct 1077 GGTAACATTGTAACCGGAGATGATATTCAGACTCAGGCGGTTATTAGCAGTCAAGCGCTT 1136
Query 1018 CCTGGTTTGTTAAACCTTTTGAAAAACACATACAAGAAGAGTATCAAGAAGGAAGCTTGC 1077
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1137 CCTGGTCTGTTAAACCTTTTGAAGAACACATACAAGAAGAGTATCAAGAAGGAAGCTTGC 1196
Query 1078 TGGACGATCTCTAACATTACAGCTGGGAACTCAAGTCAAATTCAA-AAGT 1126
||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1197 TGGACTATCTCTAACATTACAGCTGGGAACACAAGTCAAATTCAAGAAGT 1246
> AT4G02150.1 | Symbols: MOS6, ATIMPALPHA3, IMPA-3 | ARM repeat
superfamily protein | chr4:950611-953690 REVERSE LENGTH=1957
Length=1957
Score = 785 bits (425), Expect = 0.0
Identities = 716/855 (84%), Gaps = 26/855 (3%)
Strand=Plus/Plus
Query 262 ATGATTGCTGGAGTAAT-GTCAGAGGATAGAAACAT-ACAACTGGAGGCGACGGCTGGCT 319
||| |||||||| | | |||||||||||| || | |||| ||||||| || | ||
Sbjct 326 ATGGTTGCTGGAAT-CTGGTCAGAGGATAGCAA-TTCACAATTGGAGGCAACAAATCTCT 383
Query 320 T-CAGGAAATTGCTTTCAATTGAGCGTAACCCTCCGATCAATGAAGTTGTTCAATCTGGT 378
| | ||||| ||||||| ||||| | || ||||| |||||||||||||| |||||||||
Sbjct 384 TGC-GGAAACTGCTTTCTATTGAACAAAATCCTCCTATCAATGAAGTTGTACAATCTGGT 442
Query 379 GTTGTTCCTCGCATTGTGCAA-TTTCTTTCCAGGGATGACTTCACTC-AACTTCAGTTTG 436
||||||||||| ||||| || ||||||||||||||||||||| | | ||||||||||||
Sbjct 443 GTTGTTCCTCGTGTTGTG-AAGTTTCTTTCCAGGGATGACTTC-CCCAAACTTCAGTTTG 500
Query 437 AGGCAGCTTGGGCGCTTACCAATATCGCTTCAGGGACATCTGAGAACACTAAA-GTCATT 495
|||||||||||||||| ||||| || |||||||||||||| |||||||| ||| |||||
Sbjct 501 AGGCAGCTTGGGCGCTCACCAACATTGCTTCAGGGACATCAGAGAACAC-AAATGTCATC 559
Query 496 ATTGATAGTGGGGCTGTCCCTTTATTCGTCAAACTTCTTAGTTCTGCAAGTGATGAAGTC 555
||||| ||||| |||||||| ||||| || ||||||| || ||||| ||||| || |||
Sbjct 560 ATTGAAAGTGGAGCTGTCCCGATATTCATCCAACTTCTCAGCTCTGCTAGTGAAGATGTC 619
Query 556 CGAGAACAGGCTGTCTGGGCATTGGGAAACGTTGCTGGTGACTCGCCAAAGTGCCGTGA- 614
|| ||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||| ||
Sbjct 620 CGCGAACAGGCTGTTTGGGCATTGGGAAATGTTGCTGGAGACTCACCAAAATGCCGGGAT 679
Query 615 TCATGTCCTAAGTTGCGAG-GCCATGATGTCTCTTTTGGCTCAATTCAATGAGCATTCAA 673
| | |||||||||| || | ||||||| ||||| || |||||||||||||| || |||
Sbjct 680 TTA-GTCCTAAGTTACG-GTGCCATGACACCTCTTCTGTCTCAATTCAATGAGAATACAA 737
Query 674 AGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCTGCAGAGGGAAG-CCG 732
|||| || |||||||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 738 AGCTTTCAATGCTGAGAAATGCTACATGGACATTATCAAACTTCTGCAGAGGGAAGCCCC 797
Query 733 CAGCCTGCATTTGAACAGACAAAAGCAGCTTTACCAGCTCTTGAGCGCCTTCTGCATTCA 792
|| || ||||||||||||||| || |||||||||||| ||||||||||||| |||| |||
Sbjct 798 CA-CCCGCATTTGAACAGACACAACCAGCTTTACCAGTTCTTGAGCGCCTTGTGCAATCA 856
Query 793 ACCGACGAAGAAGTTCTCACAGATGCATCCTGGGCTCTCTCATATCTATCTGATGGTACA 852
| || |||||||||||||||||||||| ||||||||| ||||| || || ||| | ||
Sbjct 857 ATGGATGAAGAAGTTCTCACAGATGCATGCTGGGCTCTGTCATACCTCTCGGATAATTCA 916
Query 853 AACGAGAAAATACAAACTGTTATCGACGCTGGCGTCATACCTCGTCTTGTTCAGCTCTTA 912
||||| ||||||||| | || || || || || || | ||||| || | |||||||||
Sbjct 917 AACGACAAAATACAAGCAGTCATTGAAGCAGGAGTTGTTCCTCGCCTCATCCAGCTCTTA 976
Query 913 GCTCATCCATCACCCTCAGTTCTGGTTCCAGCTCTCCGTACCATTGGTAATATTGTAACC 972
| |||| | || || ||||| ||| |||| ||||| ||||||||||| ||||||||||||
Sbjct 977 GGTCATTCGTCGCCATCAGTGCTGATTCCTGCTCTTCGTACCATTGGAAATATTGTAACC 1036
Query 973 GGAGATGATCTTCAGACTCAGGA-GGTTAT-TAACAGTCAAGCGCTTCCTGGT-TTGTTA 1029
|| |||||||| |||||||| || |||| | | ||| |||||||||||| || || ||
Sbjct 1037 GGGGATGATCTACAGACTCA-GATGGTTCTCGACCAG-CAAGCGCTTCCTTGTCTT-TTG 1093
Query 1030 AACCTTTTGAAAAACACA-TACAAGAAGAGTATCAAGAAGGAAGCTTGCTGGACGATCTC 1088
|||||| | ||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1094 AACCTTCTAAAAAACA-ATTACAAGAAGAGTATCAAGAAGGAAGCTTGCTGGACTATCTC 1152
Query 1089 TAACATTACAGCTGG 1103
||||||||||||||
Sbjct 1153 CAACATTACAGCTGG 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57831027840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5