BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918927

Length=229
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02730.1 | Symbols: ATCSLD5, CSLD5, SOS6 | cellulose synthas...   158    3e-38


> AT1G02730.1 | Symbols: ATCSLD5, CSLD5, SOS6 | cellulose synthase-like 
D5 | chr1:594573-598657 REVERSE LENGTH=3854
Length=3854

 Score =  158 bits (85),  Expect = 3e-38
 Identities = 94/98 (96%), Gaps = 1/98 (1%)
 Strand=Plus/Plus

Query  74    AGAATCTTCTATGTTGAGTTCCCTCAGAAGTTTGAAGGTATTGGACCCAAATGATCGTTA  133
             ||||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||||
Sbjct  2243  AGAATCTGCTATGTTCAGTTCCCTCAGAGGTTTGAAGGTATT-GACCCAAATGATCGTTA  2301

Query  134   TGCAAACCACAACACTGTCTTCTTTGATGTTAGTATGA  171
             ||||||||||||||||||||||||||||||||||||||
Sbjct  2302  TGCAAACCACAACACTGTCTTCTTTGATGTTAGTATGA  2339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10304888545


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5