BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg918933 Length=1356 Score E Sequences producing significant alignments: (Bits) Value AT1G02790.1 | Symbols: PGA4 | polygalacturonase 4 | chr1:610391... 2292 0.0 > AT1G02790.1 | Symbols: PGA4 | polygalacturonase 4 | chr1:610391-612324 REVERSE LENGTH=1658 Length=1658 Score = 2292 bits (1241), Expect = 0.0 Identities = 1320/1358 (97%), Gaps = 5/1358 (0%) Strand=Plus/Plus Query 1 TTAAATTTGTTAACACTCTTTTAAAAGAACaaaaaaagcaaaaaaaTAATAAAGATATTA 60 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 35 TTAAATTTGTTAACACTCTTTTAAAAGAACAAAAAAAGCAAAAAAAAAATAAAGATATTA 94 Query 61 TCACCATGGCTAACGCAAGAAGTTTGGTCGCCGAGGCAAACAATATTAACGTAGGTTCAT 120 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 95 TCACCATGGCTAACGCAAGAAGTTTGGTCGCCAAGGCAAACAATATTAACGTAGGTTCAT 154 Query 121 TGATTCTAATGGCCTTGGTGTTTGGTTCTTGCGTGGCTAATGGTGAATATCTCGGCGGCC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 155 TGATTCTAATGGCCTTGGTGTTTGGTTCTTGCGTGGCTAATGGTGAATATCTCGGCGGCC 214 Query 181 GCCGTGGTCTCGCCGCTAATTCCGGTAACCCCACAGTCTATGATATTACTAAGTTTGGAG 240 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 215 GCCGTGGTCTCGCTGCTAATTCCGGTAACCCCACGGTCTATGATATTACTAAGTTTGGAG 274 Query 241 CCGTAGGAGATGGTTCCACCAATACTTTTAAGGCGTTTTTGAACACATGGATCCAAGTGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 275 CCGTAGGAGATGGTTCCACCAATACTTTTAAGGCGTTTTTGAACACATGGATACAAGTGT 334 Query 301 GTGATAGTCCAGTACCAGCAACGCTACTAGTTCCTAAGGG-ACAATTTTTGGCTGGTCCA 359 |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 335 GTGACAGTCCAGTACCAGCAACGCTACTAGTTCCTAAGGGAAC-ATTTTTGGCTGGTCCA 393 Query 360 GTCATTTTCGCCGGTCCATGCAAGAGCAAAGTGACCGTCAATGTTCA-AGGCACAATCAT 418 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 394 GTCATTTTCGCCGGTCCATGCAAGAGCAAAGTGACCGTCAATGTT-ATAGGCACAATCAT 452 Query 419 CGCTACGACCAGCGGGTACGCAACTCCCGAATGGTTCTTGTTCGAACGTGTCGACAATCT 478 |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 453 CGCTACGACCAGCGGGTACGCAACTCCCGAGTGGTTCTTGTTCGAGCGTGTTGACAATCT 512 Query 479 CGTCCTCACCGGAACCGGCACATTCCACGGGAAAGGTGAAGCTGTCTGGAAAGCAGATGG 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 513 CGTCCTCACCGGAACCGGCACATTCCACGGGAAAGGTGAAGCTGTCTGGAAAGCAGATGG 572 Query 539 TTGTGGCAAAAAGGTCCAATGCAATCTTCCTCCAACGTCTCTCAAATTCAGGAACATGAA 598 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 573 TTGTGGTAAAAAGGTCCAATGCAATCTTCCTCCAACGTCTCTCAAATTCAGGAACATGAA 632 Query 599 AAATGTTGAAATCAATGGCATAAGCTCGGTGAACGCAAAGGCCTTCCACATGTTCTTAGT 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 633 AAATGTTGAAATCAATGGCATAAGCTCGGTGAACGCAAAGGCCTTCCACATGTTCTTAGT 692 Query 659 CAAAACTGAGAATGTTAACATCCAAAACATTAAGCTTATCGCACCTGCTGAAAGTCCCAA 718 |||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| Sbjct 693 CAAAACTGAGAATGTTAACATCCAAAACATTAAGCTTACCGCACCAGCTGAAAGCCCCAA 752 Query 719 CACCGATGGTATCCATTTGAGCAATGCAGACAACGTTAGCATCCTCGACAGTACCATCGC 778 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 753 CACCGATGGTATCCATTTGAGCAATGCAGACAACGTTAGCATCCTCGACAGTACCATAGC 812 Query 779 GACTGGAGACGATTGTGTTTCAGTCGGTCGTGGCTCCAACAACGTAACCGTCGAACGTGT 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 813 GACTGGAGACGATTGTGTTTCAGTCGGTCGTGGCTCCAACAACGTAACCGTCGAACGTGT 872 Query 839 GATTTGTGGTCCAGGACACGGTTTAAGTGTCGGTAGTCTTGGTAAGTACAAGAACGAGGA 898 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 873 GATTTGTGGTCCAGGACACGGTCTAAGTGTCGGTAGTCTTGGTAAGTACAAGAACGAGGA 932 Query 899 AGACGTTAGCGGAATCCACGTTAACAACTGCACGATGGTTGAGACCGACAATGGTCTTAG 958 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 933 AGACGTTAGCGGAATCCACGTTAACAACTGCACGATGATTGAGACCGACAATGGTCTTAG 992 Query 959 GATCAAGACATGGGGTGGTTCAGATCCAAGCAAGGCTGTGGACATTAAATTTGAAAACAT 1018 |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 993 GATCAAGACATGGGGTGGGTCAGACCCAAGCAAGGCTGTGGACATTAAGTTTGAAAACAT 1052 Query 1019 CATCATGCAGAGTGTCAAGAACCCAATTATCATTGATCAAAACTACGGTTCAAGAGGCGG 1078 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1053 CATCATGCAGAGTGTCAAGAACCCAATCATCATTGATCAAAACTACGGTTCAAGAGGCGG 1112 Query 1079 AGATTCACAAGTTGCTATAAGTGATATATTGTTCAAGAACATTAGAGGAACAACAATTAC 1138 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1113 AGATTCACAAGTTGCTATAAGTGATATTTTGTTCAAGAACATTAGAGGAACAACAATTAC 1172 Query 1139 AAAAGATATCGTTCAGATTATGTGTAGCAAATCGGTGCCGTGCAAAGGAGTCAACGTTGT 1198 ||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1173 AAAAGATGTTGTTCAGATTATGTGTAGCAAATCGGTGCCGTGCCAAGGAGTAAACGTTGT 1232 Query 1199 TGACGTGAACTTGAACTATGTAGGCAAGACAGGAGGAGAGAAGAAGTCGTCGTCAGGCGG 1258 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1233 TGACGTGAACTTGGACTATGTAGGCAAGACAGGAGGAGAGAAGAAGTCGTCATCAGGCGG 1292 Query 1259 TTTGGTGGGAGCTCTTTGCGATAACGCTAATGTTATATTTGGTGGAAAACTTAGCTTCCC 1318 |||||| |||||||||||||||||||| |||||||| || |||||||||||||| ||||| Sbjct 1293 TTTGGTCGGAGCTCTTTGCGATAACGCCAATGTTATCTTCGGTGGAAAACTTAGTTTCCC 1352 Query 1319 TATGTGTCCCAAATAAGCTTTTTGGTATaaaaaaaTTT 1356 ||||||||||||||||||||||||||||||| || ||| Sbjct 1353 TATGTGTCCCAAATAAGCTTTTTGGTATAAATAA-TTT 1389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66766724850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5