BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918933
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02790.1 | Symbols: PGA4 | polygalacturonase 4 | chr1:610391... 2292 0.0
> AT1G02790.1 | Symbols: PGA4 | polygalacturonase 4 | chr1:610391-612324
REVERSE LENGTH=1658
Length=1658
Score = 2292 bits (1241), Expect = 0.0
Identities = 1320/1358 (97%), Gaps = 5/1358 (0%)
Strand=Plus/Plus
Query 1 TTAAATTTGTTAACACTCTTTTAAAAGAACaaaaaaagcaaaaaaaTAATAAAGATATTA 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 35 TTAAATTTGTTAACACTCTTTTAAAAGAACAAAAAAAGCAAAAAAAAAATAAAGATATTA 94
Query 61 TCACCATGGCTAACGCAAGAAGTTTGGTCGCCGAGGCAAACAATATTAACGTAGGTTCAT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 95 TCACCATGGCTAACGCAAGAAGTTTGGTCGCCAAGGCAAACAATATTAACGTAGGTTCAT 154
Query 121 TGATTCTAATGGCCTTGGTGTTTGGTTCTTGCGTGGCTAATGGTGAATATCTCGGCGGCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 TGATTCTAATGGCCTTGGTGTTTGGTTCTTGCGTGGCTAATGGTGAATATCTCGGCGGCC 214
Query 181 GCCGTGGTCTCGCCGCTAATTCCGGTAACCCCACAGTCTATGATATTACTAAGTTTGGAG 240
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 215 GCCGTGGTCTCGCTGCTAATTCCGGTAACCCCACGGTCTATGATATTACTAAGTTTGGAG 274
Query 241 CCGTAGGAGATGGTTCCACCAATACTTTTAAGGCGTTTTTGAACACATGGATCCAAGTGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 275 CCGTAGGAGATGGTTCCACCAATACTTTTAAGGCGTTTTTGAACACATGGATACAAGTGT 334
Query 301 GTGATAGTCCAGTACCAGCAACGCTACTAGTTCCTAAGGG-ACAATTTTTGGCTGGTCCA 359
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 335 GTGACAGTCCAGTACCAGCAACGCTACTAGTTCCTAAGGGAAC-ATTTTTGGCTGGTCCA 393
Query 360 GTCATTTTCGCCGGTCCATGCAAGAGCAAAGTGACCGTCAATGTTCA-AGGCACAATCAT 418
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 394 GTCATTTTCGCCGGTCCATGCAAGAGCAAAGTGACCGTCAATGTT-ATAGGCACAATCAT 452
Query 419 CGCTACGACCAGCGGGTACGCAACTCCCGAATGGTTCTTGTTCGAACGTGTCGACAATCT 478
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 453 CGCTACGACCAGCGGGTACGCAACTCCCGAGTGGTTCTTGTTCGAGCGTGTTGACAATCT 512
Query 479 CGTCCTCACCGGAACCGGCACATTCCACGGGAAAGGTGAAGCTGTCTGGAAAGCAGATGG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 CGTCCTCACCGGAACCGGCACATTCCACGGGAAAGGTGAAGCTGTCTGGAAAGCAGATGG 572
Query 539 TTGTGGCAAAAAGGTCCAATGCAATCTTCCTCCAACGTCTCTCAAATTCAGGAACATGAA 598
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TTGTGGTAAAAAGGTCCAATGCAATCTTCCTCCAACGTCTCTCAAATTCAGGAACATGAA 632
Query 599 AAATGTTGAAATCAATGGCATAAGCTCGGTGAACGCAAAGGCCTTCCACATGTTCTTAGT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 AAATGTTGAAATCAATGGCATAAGCTCGGTGAACGCAAAGGCCTTCCACATGTTCTTAGT 692
Query 659 CAAAACTGAGAATGTTAACATCCAAAACATTAAGCTTATCGCACCTGCTGAAAGTCCCAA 718
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 693 CAAAACTGAGAATGTTAACATCCAAAACATTAAGCTTACCGCACCAGCTGAAAGCCCCAA 752
Query 719 CACCGATGGTATCCATTTGAGCAATGCAGACAACGTTAGCATCCTCGACAGTACCATCGC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 753 CACCGATGGTATCCATTTGAGCAATGCAGACAACGTTAGCATCCTCGACAGTACCATAGC 812
Query 779 GACTGGAGACGATTGTGTTTCAGTCGGTCGTGGCTCCAACAACGTAACCGTCGAACGTGT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GACTGGAGACGATTGTGTTTCAGTCGGTCGTGGCTCCAACAACGTAACCGTCGAACGTGT 872
Query 839 GATTTGTGGTCCAGGACACGGTTTAAGTGTCGGTAGTCTTGGTAAGTACAAGAACGAGGA 898
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 873 GATTTGTGGTCCAGGACACGGTCTAAGTGTCGGTAGTCTTGGTAAGTACAAGAACGAGGA 932
Query 899 AGACGTTAGCGGAATCCACGTTAACAACTGCACGATGGTTGAGACCGACAATGGTCTTAG 958
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 933 AGACGTTAGCGGAATCCACGTTAACAACTGCACGATGATTGAGACCGACAATGGTCTTAG 992
Query 959 GATCAAGACATGGGGTGGTTCAGATCCAAGCAAGGCTGTGGACATTAAATTTGAAAACAT 1018
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 993 GATCAAGACATGGGGTGGGTCAGACCCAAGCAAGGCTGTGGACATTAAGTTTGAAAACAT 1052
Query 1019 CATCATGCAGAGTGTCAAGAACCCAATTATCATTGATCAAAACTACGGTTCAAGAGGCGG 1078
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1053 CATCATGCAGAGTGTCAAGAACCCAATCATCATTGATCAAAACTACGGTTCAAGAGGCGG 1112
Query 1079 AGATTCACAAGTTGCTATAAGTGATATATTGTTCAAGAACATTAGAGGAACAACAATTAC 1138
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1113 AGATTCACAAGTTGCTATAAGTGATATTTTGTTCAAGAACATTAGAGGAACAACAATTAC 1172
Query 1139 AAAAGATATCGTTCAGATTATGTGTAGCAAATCGGTGCCGTGCAAAGGAGTCAACGTTGT 1198
||||||| | ||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1173 AAAAGATGTTGTTCAGATTATGTGTAGCAAATCGGTGCCGTGCCAAGGAGTAAACGTTGT 1232
Query 1199 TGACGTGAACTTGAACTATGTAGGCAAGACAGGAGGAGAGAAGAAGTCGTCGTCAGGCGG 1258
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1233 TGACGTGAACTTGGACTATGTAGGCAAGACAGGAGGAGAGAAGAAGTCGTCATCAGGCGG 1292
Query 1259 TTTGGTGGGAGCTCTTTGCGATAACGCTAATGTTATATTTGGTGGAAAACTTAGCTTCCC 1318
|||||| |||||||||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct 1293 TTTGGTCGGAGCTCTTTGCGATAACGCCAATGTTATCTTCGGTGGAAAACTTAGTTTCCC 1352
Query 1319 TATGTGTCCCAAATAAGCTTTTTGGTATaaaaaaaTTT 1356
||||||||||||||||||||||||||||||| || |||
Sbjct 1353 TATGTGTCCCAAATAAGCTTTTTGGTATAAATAA-TTT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5