BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918934
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02800.1 | Symbols: ATCEL2, CEL2 | cellulase 2 | chr1:613216... 2512 0.0
AT4G02290.1 | Symbols: AtGH9B13, GH9B13 | glycosyl hydrolase 9B... 1127 0.0
> AT1G02800.1 | Symbols: ATCEL2, CEL2 | cellulase 2 | chr1:613216-616191
REVERSE LENGTH=1764
Length=1764
Score = 2512 bits (1360), Expect = 0.0
Identities = 1470/1524 (96%), Gaps = 4/1524 (0%)
Strand=Plus/Plus
Query 14 ctagagaaatggctctctatctctattcttctcgactcatcatctgtctctcttttc-tc 72
|||||||||||||||||||||||| |||||| |||||||||| || |||||| |||| ||
Sbjct 81 CTAGAGAAATGGCTCTCTATCTCTCTTCTTCACGACTCATCACCTTTCTCTC-TTTCATC 139
Query 73 tTGCTTATCACCAATGGCTTCTCGTCCTCTTCCTCTCGCTCTAGCATCCACCATCGTCAC 132
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 140 TTGCTTCTCTCCAATGGCTTCTCGTCCTCTTCCTCTCGCCCTAGCATCCACCATCGTCAC 199
Query 133 CACCTCGACAACCACAATTACAAAGACGCTCTCTCCAAGTCCATTCTCTTCTTCGAAGGT 192
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CACCTGGACAACCACAATTACAAAGACGCTCTCTCCAAGTCCATTCTCTTCTTCGAAGGT 259
Query 193 CAAAGATCCGGAAAGCTTCCTCCAAACCAGAGGATGACTTGGAGAAGTAACTCTGGCCTC 252
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 260 CAAAGATCCGGAAAGCTTCCTCCAAACCAGAGAATGACTTGGAGAAGCAACTCTGGTCTC 319
Query 253 TCTGATGGTTCTGCCCTCAACGTGGATTTGGTGGGAGGATACTACGATGCAGGGGACAAT 312
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TCTGATGGCTCTGCTCTCAACGTGGATTTGGTGGGAGGATACTACGATGCAGGGGACAAT 379
Query 313 ATGAAGTTTGGATTCCCAATGGCATTCACAACCACAATGCTCTCATGGAGTTTAATTGAG 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ATGAAGTTTGGATTCCCAATGGCATTCACAACCACAATGCTCTCATGGAGTTTAATTGAG 439
Query 373 TTTGGTGGTCTCATGAAATCTGAGTTACCAAACGCTAAAGACGC-AGTTCGTTGGGCCAC 431
||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| ||
Sbjct 440 TTTGGTGGTCTCATGAAATCTGAGTTACCAAACGCAAAAGACGCTA-TTCGTTGGGCTAC 498
Query 432 TGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAGGTTGGTGATCC 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAGGTTGGTGATCC 558
Query 492 TAACATGGACCATGCGTGTTGGGAGAGACCAGAAGACATGGATACACCAAGAAGTGTGTT 551
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 559 TAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATGGACACACCAAGAAGTGTGTT 618
Query 552 TAAAGTCGACAAGAACAATCCTGGTTCTGATATCGCCGGTGAAATCGCTGCCGCTCTTGC 611
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 619 TAAAGTCGACAAGAACAATCCTGGTTCTGATATCGCCGGTGAAATCGCCGCCGCTCTTGC 678
Query 612 CGCTGCTTCAATTGTTTTCGGGAGATGCGATCCTTCTTACTCCAATCTCCTCCTCCAACG 671
||||||||||||||||||| | | ||| ||||||||||||||||||| ||||||||||||
Sbjct 679 CGCTGCTTCAATTGTTTTCAGAAAATGTGATCCTTCTTACTCCAATCACCTCCTCCAACG 738
Query 672 AGCCATTACGGTTTTTACATTTGCGGACAAATACAGAGGACCCTACAGTGCAGGTCTGGC 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AGCCATTACGGTTTTTACATTTGCGGACAAATACAGAGGACCCTACAGTGCAGGTCTGGC 798
Query 732 CCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGGCTACCAGGACGAATTGTTATGGGG 791
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 799 CCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGGATATCAGGATGAATTGTTATGGGG 858
Query 792 AGCTGCTTGGTTACACAAAGCAACAAATAACCCAACATATCTCAATTACATCAAAGCTAA 851
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 AGCTGCTTGGTTACAAAAAGCAACAAATAACCCAACATATCTCAATTACATCAAAGCTAA 918
Query 852 TGGACAAATCCTTGGAGCTGATGAGTTTGATAACATGTTTAGTTGGGATAATAAGCACGT 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 TGGACAAATCCTTGGAGCTGATGAGTTTGATAACATGTTTAGTTGGGATAATAAGCACGT 978
Query 912 TGGTGCTAGAATCCTTCTCTCCAAGGAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGA 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TGGTGCTAGAATCCTTCTCTCCAAGGAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGA 1038
Query 972 ATACAAAGAGCATGCTGATAGTTTCATTTGCTCTGTTTTACCTGGAGCCTCCTCTTCCCA 1031
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1039 ATACAAAGAGCATGCTGATAGTTTCATTTGCTCTGTTCTACCTGGAGCATCCTCTTCCCA 1098
Query 1032 ATACACCCCAGGTGGGCTATTGTTCAAGATGGGTGAGAGCAACATGCAATACGTGACATC 1091
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1099 ATATACACCAGGTGGGCTATTGTTCAAGATGGGTGAGAGCAACATGCAATACGTGACGTC 1158
Query 1092 TACATCGTTCTTGCTCTTGACCTACGCCAAATATTTAACCTCTGCTCGCACTGTCGCTTA 1151
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1159 TACATCGTTCTTGCTCTTGACCTACGCCAAATACTTAACCTCTGCTCGCACCGTCGCTTA 1218
Query 1152 TTGCGGTGGTTCCGTCGTCACCCCTGCCCGCCTCCGCTCCATCGCTAGGAAACAGGTGGA 1211
||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1219 TTGCGGTGGCTCCGTCGTCACCCCTGCCCGCCTCCGCTCCATCGCAAAGAAACAGGTGGA 1278
Query 1212 TTATCTACTTGGAGACAACCCGTTGAAGATGTCATACATGGTTGGTTATGGTCTTAAATA 1271
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1279 TTATCTACTTGGAGGCAACCCGTTGAAGATGTCATACATGGTTGGTTATGGTCTGAAATA 1338
Query 1272 TCCACGTCGGATTCACCAACGTGGCTCATCTCTCCCCTCCGTTGCAGTCCACCCGACCAG 1331
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 TCCACGTCGGATTCACCACCGTGGCTCATCTCTCCCCTCCGTTGCAGTCCACCCGACCAG 1398
Query 1332 GATCCAGTGCCACGATGGCTTCTCCATGTTTACCTCTCAATCTCCTAACCCTAACGACTT 1391
||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 1399 GATCCAGTGCCACGACGGCTTCTCCTTGTTTACCTCTCAATCTCCTAATCCTAACGACCT 1458
Query 1392 AGTCGGTGCAGTCGTCGGTGGTCCCGACCAGAACGACCAATTCCCTGACGAACGGTCCGA 1451
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1459 AGTCGGTGCAGTAGTCGGTGGTCCGGACCAGAACGATCAATTCCCTGACGAACGGTCCGA 1518
Query 1452 CTATGGACGGTCCGAGCCAGCAACTTACATTAACGCTCCACTTGTTGGAGCTTTGGCTTG 1511
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 CTACGGACGGTCAGAGCCAGCAACTTACATTAACGCTCCACTTGTTGGAGCTTTGGCTTA 1578
Query 1512 TCTTGCTCGATCCTAAGGCCAACT 1535
||||||||||||||||||||||||
Sbjct 1579 TCTTGCTCGATCCTAAGGCCAACT 1602
> AT4G02290.1 | Symbols: AtGH9B13, GH9B13 | glycosyl hydrolase
9B13 | chr4:1002394-1005253 REVERSE LENGTH=1939
Length=1939
Score = 1127 bits (610), Expect = 0.0
Identities = 1164/1425 (82%), Gaps = 64/1425 (4%)
Strand=Plus/Plus
Query 117 CATCCACCATCGTCACCACCTCGACAACCACAATTACAAAGACGCTCTCTCCAAGTCCAT 176
||| ||||||||||||||| | | ||| ||||| |||||||| |||||| | || || ||
Sbjct 252 CAT-CACCATCGTCACCACTTGGCCAAGCACAACTACAAAGATGCTCTCACTAAATCAAT 310
Query 177 TCTCTTCTTCGAAGGTCAAAGATC-CGGAAAGCTTCCTCCAAACCAGAGGATGACTTGGA 235
|||||||| ||||| ||||| || ||||| |||||| | |||||||| |||| |||||
Sbjct 311 CCTCTTCTTTGAAGGCCAAAGGTCAGGGAAA-CTTCCTTCTAACCAGAGAATGAGTTGGA 369
Query 236 GAAGTA-ACTCTGGCCTCTCTGATGGTTCTGC-CCTCAACGTGGATTTGGTGGGAGGATA 293
|||| | ||||||| ||||||||||| ||||| | || | ||||||||||| ||||| ||
Sbjct 370 GAAG-AGACTCTGGTCTCTCTGATGGCTCTGCTCTTC-ATGTGGATTTGGTTGGAGGGTA 427
Query 294 CTACGATGCAGGGGACAATATGAAGTTTGGATTCCCAATGGCATTCACAACCACAATGCT 353
||| |||||||| |||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 428 CTATGATGCAGGAGACAATATCAAATTTGGTTTCCCAATGGCATTCACAACCACAATGCT 487
Query 354 CTCATGGAGTTTAATTGAGTTTGGTGGTCTCATGAAATCTGAGTTACCAAACGCTAAAG- 412
||||||||| ||||||| || ||||| |||||||||||||| |||| ||||||||||
Sbjct 488 TTCATGGAGTGTAATTGAATTCGGTGGACTCATGAAATCTGAATTACAAAACGCTAAAAT 547
Query 413 A-CGCAGTTCGTTGGGCCACTGACTT-TCTCCTCAAAGCCACTTCACATCCTGATACCAT 470
| || | |||||||||| ||||| || ||||||||||||||||||||| ||||| || ||
Sbjct 548 AGCG-A-TTCGTTGGGCTACTGA-TTATCTCCTCAAAGCCACTTCACAACCTGACACAAT 604
Query 471 TTATGTTCAGGTTGGTGATCCTAACATGGACCATGCGTGTTGGGAGAGACCAGAAGACAT 530
|||||||| ||||||||| |||| | |||||| | |||||||| ||||| ||||||||
Sbjct 605 CTATGTTCAAGTTGGTGATGCTAATAAAGACCATTCTTGTTGGGAAAGACCTGAAGACAT 664
Query 531 GGATACACCAAGAAGTGTGTTTAAAGTCGACAAGAACAATCCTGGTTCTGATATCGCCGG 590
|||||| |||||||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct 665 GGATACTGTAAGAAGTGTGTTTAAAGTTGACAAGAACATTCCTGGTTCTGATGTCGCCGC 724
Query 591 TGAAATCGCTGCCGCTCTTGCCGCTGCTTCAATTGTTTTCGGGAGATGC-GATCCTTCTT 649
||||| ||| || ||||| ||||| || | ||||| ||| | | || | ||||||||||
Sbjct 725 TGAAACCGCCGCTGCTCTAGCCGCCGCCGCCATTGTATTCAGAAAAT-CTGATCCTTCTT 783
Query 650 ACTCCAATCTCCTCCTCCAACGAGCCATTACG-GTTTTTACATTTGCGGACAAATACAGA 708
||||||| |||||||| |||||||||| | | |||||| ||||||||||||||||||||
Sbjct 784 ACTCCAAAGTCCTCCTCAAACGAGCCATCA-GTGTTTTTGCATTTGCGGACAAATACAGA 842
Query 709 GGACCCTACAGTGCAGG-TCTGGCCCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGG 767
||| | || |||||||| | | || || ||||||||||| || || |||||||||||
Sbjct 843 GGAACTTATAGTGCAGGAT-TAAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGG 901
Query 768 CTACCAGGACGAATTGTTATGGGGAGCTGCTTGGTTACACAAAGCAACAAATAACCCAAC 827
|| ||||| |||||||| |||||||||||||||||||| ||||| ||||| || ||
Sbjct 902 TTATCAGGATGAATTGTTGTGGGGAGCTGCTTGGTTACAAAAAGCGACAAAGAATATAAA 961
Query 828 ATATCTCAATTACATCAAAG-CTAATGGACAAATCCTTGGAGCTGATGAGTTTGATAACA 886
|||| | |||||||| ||| | |||||||||||||||||||||| ||| | ||||||||
Sbjct 962 ATATTTGAATTACATAAAAATC-AATGGACAAATCCTTGGAGCTGCTGAATATGATAACA 1020
Query 887 -TGTTTAGTTGGGATAATAAGCACGTTGGTGCTAGAATCCTTCTCTCC-AAGG-AGTTTC 943
| ||| |||||||||| ||||||| |||||| ||||||||||| | | |||| | |||
Sbjct 1021 CT-TTTGGTTGGGATAACAAGCACGCTGGTGCCAGAATCCTTCT-TACTAAGGCATTTT- 1077
Query 944 TGATTCAGAAAGTGAAGTCACTTGAAGAATACAAAGAG-CATGCTGATAGTTTCATTTGC 1002
|| ||||||| |||||| ||||| | |||||||||| | |||||||||| |||||| |||
Sbjct 1078 TGGTTCAGAATGTGAAGACACTTCATGAATACAAAG-GTCATGCTGATAATTTCATCTGC 1136
Query 1003 TCTGTT-TTACCTGGAGC-C-TC-CTCTTC--C-CAATACACCCCAGGTGGGCTATTGTT 1055
|||||| || |||||||| | | |||||| | || || || |||||||| |||||||
Sbjct 1137 TCTGTTATT-CCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAGGTGGATTATTGTT 1195
Query 1056 CAAGATGGGTGAGAGC-AACATGCAATACGTGACATCTACATCGTTCTTGCTCTTGACCT 1114
|| |||| || || ||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 1196 TAAAATGGCAGAC-GCCAACATGCAATACGTGACGTCAACATCGTTCTTGCTCTTAACCT 1254
Query 1115 ACGCCAAATATTTAACCTCTGCTCGCA-CTGTCG-CTTATTGCGGTGGTTCCGTCGT-CA 1171
| |||||||| |||||||| || | | | |||| | |||||||||| |||||| | ||
Sbjct 1255 ATGCCAAATACTTAACCTCCGC-CAAAACCGTCGTCC-ATTGCGGTGGCTCCGTC-TACA 1311
Query 1172 C-CCCTGCCCGCCTCCGCTCCATCGCTAGGAA-ACAGGTGGATTATCTACTTGGAGACAA 1229
| ||| | | | || ||||||||||| | || ||||||||||||||| |||||||||||
Sbjct 1312 CTCCCGGTC-GTCTTCGCTCCATCGCCAA-AAGACAGGTGGATTATCTTCTTGGAGACAA 1369
Query 1230 CCCGTTGAAGA-TGTCATACATGGTTGGTTATGGTCTTAAATATCC-ACGTCGGATTCAC 1287
||| || |||| |||| |||||||||||||| |||| |||| ||| ||| | || |||
Sbjct 1370 CCCATT-AAGAATGTCTTACATGGTTGGTTACGGTCCAAAAT-TCCCACGGAGAATCCAC 1427
Query 1288 CAACGTGGCTCATC-TCTCCCCTCCGTTGCA-GTCCACCCGACCAGGATCCAGTGCCACG 1345
|| |||||||| || | | || | |||||| | ||||||| ||| |||||| ||||||
Sbjct 1428 CACCGTGGCTCCTCAT-TACCTTGTGTTGCAAG-CCACCCGGCCAAGATCCAATGCCACC 1485
Query 1346 ATGGCTTCTCCA-TGTTTACCTCTCAATCTCCTAACCCTAACGAC-TTAGTCGGTGCAGT 1403
| || || | || | | | |||||||||||| ||||||||| | || || ||||||||
Sbjct 1486 AAGGATT-TGCAATCATGAACTCTCAATCTCCAAACCCTAACTTCCTT-GTTGGTGCAGT 1543
Query 1404 CGTCGGTGGTCCCGACCAGAACGACCAATTCCCTGACGAACGGTCCGACTATG-GACGGT 1462
||| |||||||| |||||| | || | ||||| ||||||||||| || || | | | ||
Sbjct 1544 CGTTGGTGGTCCGGACCAGCATGATCGCTTCCCAGACGAACGGTCTGATTACGAG-CAGT 1602
Query 1463 CCGAGCCAGCAACTTACATTAACGCTCCACTTGTTGGAGCT-TTG 1506
||||||| || |||||||| || | ||||| ||||||||| |||
Sbjct 1603 CCGAGCCGGCTACTTACATCAATTCACCACTCGTTGGAGCTCTTG 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76355028945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5