BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918938

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02820.1 | Symbols:  | Late embryogenesis abundant 3 (LEA3) ...   401    2e-111


> AT1G02820.1 | Symbols:  | Late embryogenesis abundant 3 (LEA3) 
family protein | chr1:623765-624475 REVERSE LENGTH=615
Length=615

 Score =  401 bits (217),  Expect = 2e-111
 Identities = 300/336 (89%), Gaps = 21/336 (6%)
 Strand=Plus/Plus

Query  1    TCGAAAAACC-ATAAACCACAATGGCTCGTTCTCTCGCTAACGCTAAGATCCTCTCCGTC  59
            ||| |||||| |||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct  151  TCGTAAAACCTATAAACCACAATGGCTCGTTCTCTCGCTAACGCTAAGATCCAATCCGTC  210

Query  60   TTCGTCTCCGAAAAGCTCTCAAACGCCGTTTTCAGACGAGGGTTTGCAGCCGCAGCCAAA  119
            |||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  211  TTCGGCTCCGAAAAGCTCTCGAACGCCGTTTTCAGACGAGGGTTTGCCGCCGCAGCCAAA  270

Query  120  ACGGCGTTAGATGGGAGCGTTTCGAGCGGTGGAACCGCTTCTGCCGCGGAGATGAAGAAG  179
            |||||||||||||| |||||||    |    | |         |||||||||||||||||
Sbjct  271  ACGGCGTTAGATGGAAGCGTTT----C----G-A---------CCGCGGAGATGAAGAAG  312

Query  180  A-ATGTTGGGGAATCTTCAAGCGAGAAGGCTCCATGGGTTCCAGACCCTAAAACCGGTTA  238
            | | | ||||||| |||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  313  AGA-GCTGGGGAAGCTTCAAGCGAGAAGGCACCATGGGTTCCAGATCCTAAAACCGGTTA  371

Query  239  TTACAGACCGGAAACCGTTTCCGAGGAGATTGACCCGGCGGAGCTACGAGCTGTTCTCTT  298
            ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct  372  TTACAGACCGGAAACCGTTTCTGAGGAGATTGACCCGGCTGAGCTACGAGCTATTCTCTT  431

Query  299  GAACAACAAGCAATAAATTTATTAAAAATCGTATTT  334
            |||||||||||||||||||||||||||| |||||||
Sbjct  432  GAACAACAAGCAATAAATTTATTAAAAACCGTATTT  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15583002190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5