BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918940

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03960.1 | Symbols: IQD12 | IQ-domain 12 | chr5:1068260-1069...   520    9e-147


> AT5G03960.1 | Symbols: IQD12 | IQ-domain 12 | chr5:1068260-1069978 
REVERSE LENGTH=1357
Length=1357

 Score =  520 bits (281),  Expect = 9e-147
 Identities = 325/347 (94%), Gaps = 0/347 (0%)
 Strand=Plus/Plus

Query  96   GCTCCCAATGTGGCTGCTATCAAGATTCAGAGTTCCTTCAGGGCTTATCTAGCCAGGAAA  155
            ||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||
Sbjct  385  GCTCCCAATGTGGCTGCTATCAAGATTCAGAGTGCATTCAGGGCTTCTCTGGCCAGGAAA  444

Query  156  GCGTTGCGGGCGCGGAAGGCATTTGGAAGGCTTCAAGCAATTGTGCGTGGCCGAGCTGTT  215
            |||||||||||||  |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct  445  GCGTTGCGGGCGCTTAAGGCACTTGTAAGGCTTCAAGCAATTGTGCGTGGCCGAGCTGTT  504

Query  216  AGGCGAAAGGTTTCTGCTTTATTGAAGTCTACACTCTCCAACAAAGCTTCAACATCAAGC  275
            |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct  505  AGGCGAAAGGTTTCTGCTTTATTGAAGTCTTCACACTCCAACAAAGCTTCAACATCAAAC  564

Query  276  ATCATCCAGAGACAAACAGAGAGAAAGCATTGGTCCAAGACCAAATCTGAGATCAAAGAA  335
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct  565  ATCATCCAGAGACAAACAGAGAGAAAGCATTGGTCCAATACCAAATCTGAGATCAAAGAG  624

Query  336  GAGCTTCAGGTCTCGAACCATTAGATGAGTAACTCAAAGGTCAAGTGCAATGGTTGGGAC  395
            ||||||||||| |||||||||| | || ||||||||||||| ||||||||||||||||||
Sbjct  625  GAGCTTCAGGTATCGAACCATTCGCTGTGTAACTCAAAGGTGAAGTGCAATGGTTGGGAC  684

Query  396  AGTAGCGCTCTCACAAAGGAAGACATAAAAGCCACATGGTTGAGGAA  442
            ||||| |||||||| |||||||| |||||||||| ||||||||||||
Sbjct  685  AGTAGTGCTCTCACGAAGGAAGATATAAAAGCCATATGGTTGAGGAA  731


 Score =  257 bits (139),  Expect = 7e-68
 Identities = 160/170 (94%), Gaps = 1/170 (1%)
 Strand=Plus/Plus

Query  456   AAGACTCTGGTGATGGACAAGATCTCTCCATTATCTTTCCCGAGGGGATCTTTCAGCCGT  515
             |||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||
Sbjct  962   AAGACTCTGGTGATGGACAAGA-CTCTCCATTTTCTTTCCCAAGGAGATCTTTCAGCCGT  1020

Query  516   TTGGAGCAGAGTCTATTGGAAGACGAGAGCTGGTTTCAAAGCTCCAATGGTTTCCAGCCT  575
             |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  1021  TTGGAGCAGAGTATATTGGAAGACGAGAGCTGGTTTCAAAGATCCAATGGTTTCCAGCCG  1080

Query  576   TGCATGAGTGTGACAGGGTCTGCAAGGTAAAAGATGAGATCACTGAGCAC  625
             | |||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct  1081  TACATGAGTGTGACAGAGTCTGCAAGGGAAAAGATGAGATCACTGAGCAC  1130



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30140488200


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5