BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918952
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02910.1 | Symbols: LPA1 | tetratricopeptide repeat (TPR)-co... 2266 0.0
> AT1G02910.1 | Symbols: LPA1 | tetratricopeptide repeat (TPR)-containing
protein | chr1:655577-658148 REVERSE LENGTH=1557
Length=1557
Score = 2266 bits (1227), Expect = 0.0
Identities = 1345/1403 (96%), Gaps = 4/1403 (0%)
Strand=Plus/Plus
Query 1 GTAAACGTAGAAGAAAATTGAATGGCTGTGGCTACAGCTCCGTCGCTAAACCGCCATTTC 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GTAAGCGTAGAAGAAAATTGAATGGCTGTGGCTACAGCTCCGTCGCTAAACCGCCATTTC 62
Query 61 CTCTGCCGCGTCTCGAACCCTTACTCGAGAGTTAAGCAACGACGGCCATGGCTGCCACAA 120
| | ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 63 CCCCGCCGCATCTCGAACCTTTACTCGAGAGTTAAGCAACGAAGGCCATGGCTGCCACCA 122
Query 121 GGAAACGCTACCCTTTTCCACTCTCACCGGAATTGGGATTCCCATCTCCttt-ttttCGC 179
||| |||| ||||||||| | |||| ||||||||||||||||||||| ||| ||| |||
Sbjct 123 GGAGACGCGACCCTTTTCAATTCTCGCCGGAATTGGGATTCCCATCT-GTTTGTTTACGC 181
Query 180 TTCCTCTTCTTCTTCTCCTTCGTCGTCGCCTTCGCCTCCAAATTCGCCGACGGATGATCT 239
|||||||||||||||||| |||||||||||| || |||||||||| ||||||||||||||
Sbjct 182 TTCCTCTTCTTCTTCTCCGTCGTCGTCGCCTCCGTCTCCAAATTCACCGACGGATGATCT 241
Query 240 CACGGCAGAGTCGTGCGTCAATACTGGTCTTGATCTCTTTAAGAGAGGACGGGTCAAAGA 299
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 242 CACGGCAGAGTTGTGCGTCAATACTGGTCTTGATCTCTTTAAGAGAGGACGGGTGAAAGA 301
Query 300 TGCTCTTGTTCAGTTTGAAACTGCGCTGAGTTTGGATCCAAATCCTATTGAGTCACAAGC 359
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 302 TGCTCTTGTTCAGTTTGAAACTGCACTGAGTTTGGCTCCAAATCCTATTGAGTCACAAGC 361
Query 360 AGCTTACTATAACAAAGCATGTTGTCATGCTTACCGGGGCGAAGGAAAAAAGGCTGCT-G 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 362 TGCTTACTATAACAAAGCATGTTGTCATGCTTACCGGGGCGAAGGAAAAAAAGCTG-TGG 420
Query 419 ATTGCTTGCGAATTGCGTTAAGAGATTATAATCTGAAGTTTGCCACTATTCTTAATGATC 478
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 421 ATTGCTTGCGAATTGCGTTGAGAGATTATAATCTGAAGTTTGCCACGATTCTTAACGATC 480
Query 479 CTGATTTAGCATCCTTTCGCGCATTACCCGAGTTTAAGGAGCTGCAAGAAGAGGCTAGGT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTGATTTAGCATCCTTTCGCGCATTACCCGAGTTTAAGGAGCTGCAAGAAGAGGCTAGGT 540
Query 539 TAGGCGGGGAAGATATTGGCGATAGTTTCCGGAGAGATCTGAAACTTATCAGTGAAGTAC 598
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 TAGGCGGGGAAGATATTGGCGATAATTTCCGGAGAGATCTGAAACTTATCAGTGAAGTAC 600
Query 599 GAGCACCGTTTCGTGGCTTTAGAAAATTCTTTTATTTTGCATTTGCAGCAGCAGCGGGTA 658
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGCACCGTTTCGTGGCGTTAGAAAATTCTTTTATTTTGCATTTGCAGCAGCAGCGGGTA 660
Query 659 TCTCAACATTCTTTACTGTACCAAGACTGATTCAGGCAATCAGAGGCGGTGATGGTGCTC 718
|||||| |||||||| |||||||||||| |||||||||| |||||||||||||||||||
Sbjct 661 TCTCAATGTTCTTTACCGTACCAAGACTGGTTCAGGCAATTAGAGGCGGTGATGGTGCTC 720
Query 719 CAGATCTTCTGGAAACGACGGGAAATGCTGCAATTAACATTGGAGGTATTGTTGTTCTGG 778
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 CAAATCTTCTGGAAACTACGGGAAATGCTGCAATTAACATTGGAGGTATTGTTGTTATGG 780
Query 779 TTTCACTGTTCCTTTGGGAAAACAAGAAAGAGGAAGAACAAATGGTACAAATAACTCGAG 838
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 TTTCATTGTTCCTTTGGGAAAACAAGAAAGAGGAAGAACAAATGGTTCAAATAACTCGAG 840
Query 839 ACGAAACTCTCTCCCGGTTGCCTCTACGCCTGTCAACCAACCGTGTTGTTGAACTTGTGC 898
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 ACGAAACTCTTTCCCGGTTGCCTCTACGCCTGTCAACCAACCGCGTTGTTGAACTTGTGC 900
Query 899 AGCTAAGGGATACAGTTCGACCCGTTATTCTAGCTGGGAAAAAAGAGACTGTTACACTCG 958
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 901 AGCTAAGGGATACAGTTCGACCTGTTATTCTAGCTGGGAAAAAAGAGACTGTTACACTTG 960
Query 959 CGATGCAAAAAGCAGATCGGTTCAGAACCGAGCTCCTAAGACGAGGTGTTCTCTTAGTTC 1018
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CGATGCAAAAAGCAGATAGGTTCAGAACCGAGCTCCTAAGACGAGGTGTTCTCTTAGTTC 1020
Query 1019 CTGTGGTATGGGGTGAACGTAAAACACCGGAAATCGAGAAAAAAGGTTTTGGAGCTTCTT 1078
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTGTGGTATGGGGTGAACGCAAAACACCGGAAATCGAGAAAAAAGGTTTTGGAGCTTCTT 1080
Query 1079 CAAAGGCAGCTACATCTCTTCCTTCAATTGGGGAAGATTTCGATACACGGGCTCAATCGG 1138
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1081 CAAAGGCAGCTACATCTCTTCCTTCAATTGGGGAAGATTTTGATACACGGGCTCAATCGG 1140
Query 1139 TAGTAGCCCAATCGAAGCTGAAAGGTGAAATCAGGTTCAAGGCTGAGACTGTTTCGCCTG 1198
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1141 TTGTAGCCCAATCGAAGCTGAAAGGTGAAATCAGGTTCAAGGCCGAGACTGTTTCGCCTG 1200
Query 1199 GTGAATGGGAAAGGTGGATAAGAGATCAACAGATATCTGAAGGAGTTAACCCGGGCGATG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTGAATGGGAAAGGTGGATAAGAGATCAACAGATATCTGAAGGAGTTAACCCGGGCGATG 1260
Query 1259 ACGTGTACATTATACTGCGGTTAGATGGTCGAGTCCGCAGATCGGGTAGAGGGATGCCGG 1318
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATGTGTACATCATACTGCGGTTAGATGGTCGAGTCCGCAGATCGGGTAGAGGGATGCCGG 1320
Query 1319 ATTGGGCTGAGATATCGAAGGAGTTGCCGACGATGGATGACGTGCTCAGCAAGTTAGAAA 1378
||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||
Sbjct 1321 ATTGGGCTGAGATATCGAAGGAGTTACCGCCAATGGATGACGTTCTCAGCAAGTTAGAAA 1380
Query 1379 GATGAAACTGTGAAGCTTTCTTA 1401
|||||||||||||||||||||||
Sbjct 1381 GATGAAACTGTGAAGCTTTCTTA 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69126150465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5