BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918959
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02970.1 | Symbols: WEE1, ATWEE1 | WEE1 kinase homolog | chr... 2471 0.0
AT1G02965.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 82.4 1e-14
> AT1G02970.1 | Symbols: WEE1, ATWEE1 | WEE1 kinase homolog | chr1:673306-676378
FORWARD LENGTH=1856
Length=1856
Score = 2471 bits (1338), Expect = 0.0
Identities = 1480/1549 (96%), Gaps = 7/1549 (0%)
Strand=Plus/Plus
Query 1 AAA-TACTAATATTCATCGTCATGTTCGAGAAGAAAGGAAGAACACTGTTGGCGAAGAGG 59
||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 82 AAAGTAATAATATTCATCGTCATGTTCGAGAAGAACGGAAGAACACTGTTGGCGAAGAGG 141
Query 60 AAAACCCTAGGAACGATCAAAACCAGAAG-AACGAAGAAGATTCGCAAGATGGAAGGGAC 118
||||||| ||| || ||||||||||| | | ||||||||||||| ||||||||||||||
Sbjct 142 AAAACCCAAGGGACAATCAAAACCAG-GGCATCGAAGAAGATTCGGAAGATGGAAGGGAC 200
Query 119 ATTGGAGCGACACTCTCTGCTTCAATTCGGTCAATTGTCGAAGCTTTCTTTTGATAATCG 178
||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct 201 ATTGGAGCGTCACTCTCTGCTTCAATTCGGTCAATTGTCGAAGATTTCTTTCGAAAATCG 260
Query 179 TCCGTCGTCGAATGTTGCTTCATCGGCGTTTCAGGGTCTTCTGGATTCGGACTCGTCGGA 238
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 261 TCCGTCGTCGAATGTTGCTTCATCGGCGTTTCAGGGTCTCCTGGATTCGGATTCTTCGGA 320
Query 239 GCTCCGGAATCAGTTGGGTTCCGTTGATTCAGATACCAATTGCGGAGAGAAGGACTTTAT 298
||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 321 ACTCCGAAATCAGTTGGGTTCCGCTGATTCAGATGCCAATTGCGGAGAGAAGGACTTTAT 380
Query 299 TCTTAGCCAAGACTTCTTCTGCACACCTGACTATATAACCCCGGACAATCAGAACTTGAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TCTTAGCCAAGACTTCTTCTGCACACCTGACTATATAACCCCGGACAATCAGAACTTGAT 440
Query 359 GAGCGGCTTAGATATCAGCAAGGATCATTCTCCTTGTCCTAGGTCTCCTGTCAAATTAAA 418
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 441 GAGCGGCTTAGATATCAGCAAGGATCATTCTCCATGTCCTAGGTCTCCTGTTAAACTAAA 500
Query 419 TACAGTTAAAAGCAAAAGATGTCGCCAGGAGAGTTTCACATCAAATCATTCAAATTCTAC 478
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 501 TACAGTTAAAAGCAAAAGATGTCGCCAGGAGAGTTTCACAGGAAATCATTCAAATTCTAC 560
Query 479 CTGGTCTTCAAAACATAGAGTAGATGAACAAGAGAATGATGATATTGACACTGATGAGGT 538
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 561 CTGGTCTTCAAAACATAGAGTAGATGAACAAGAGAATGATGATATTGACACAGATGAGGT 620
Query 539 CATGTGGGATAAACTCCAAGCTAATCAAACAGAGAGGACTGGATATGTTTCACAGGCTGC 598
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 621 GATGGGGGATAAACTCCAAGCTAATCAAACAGAGAGGACTGGATACGTTTCACAGGCTGC 680
Query 599 AGTTGCTCTGCGGTGTCGGGCTATGCCACCCCCTTGCCTCAAGAATCCGTATGT-TATGA 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 681 AGTTGCTCTGCGGTGTCGGGCTATGCCACCCCCTTGCCTCAAGAATCCGTATGTGT-TGA 739
Query 658 ATCAGTCTGAGACTGCTACTGACCCTTTCGGATATCAGAGATCAAAATGCGCAAGTTTTC 717
|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 740 ATCAGTCTGAGACTGCTACTGACCCTTTTGGACATCAGAGATCAAAATGTGCAAGTTTTC 799
Query 718 TCCCTGCAAGTACAAGTGGGGATGGCTTGTCAAGATATCTCACGGACTTTCATGAAATTC 777
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 800 TCCCTGTAAGTACAAGTGGGGATGGCTTGTCAAGATATCTCACGGACTTTCATGAAATCC 859
Query 778 AGCAAATTGGTGCTGGACATTTCAGTCGTGTATTTAAGGTGTTGAAGAGAATTGATGGTT 837
||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 860 GGCAAATTGGTGCTGGACATTTCAGTCGGGTATTTAAGGTGTTGAAGAGAATGGACGGTT 919
Query 838 GCCTATATGCTGTGAAACACAGCACAAGGAAGTTGTATCTAGATTCAGAGAGACGTAAAG 897
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 920 GCCTATATGCTGTGAAACACAGCACAAGAAAGTTGTATCTAGATTCAGAGAGACGTAAAG 979
Query 898 CTATGATGGAAGTGCAAGCTCTTGCTGCTCTTGGGTTTCATGAAAATGTAGTAGGATACT 957
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 980 CTATGATGGAAGTGCAAGCTCTTGCTGCTCTTGGGTTTCATGAAAATATAGTAGGATATT 1039
Query 958 ACTCCTCGTGGTTTGAAAATGAGCAATTATACATTCAACTGGAACTCTGCGATCACAGCT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 ACTCCTCGTGGTTTGAAAATGAGCAATTATACATTCAACTGGAACTCTGCGATCACAGCT 1099
Query 1018 TGTCAGCTTTGCCCAAGAAATCTTCTCTTAAGGTCTCAGAAAGAGAGATCTTGGTGATTA 1077
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1100 TGTCAGCTTTGCCTAAGAAATCTTCTCTTAAAGTCTCAGAAAGAGAGATCTTGGTGATTA 1159
Query 1078 TGCATCAGATAGCTAAGGCATTGCAGTTTGTGCATGAGAAAGGAATAGCTCATTTAGATG 1137
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1160 TGCATCAGATAGCAAAGGCATTACATTTTGTGCATGAGAAAGGAATAGCTCATTTAGATG 1219
Query 1138 TAAAACCCGACAATATTTACATCAAGAACGGTGTTTGCAAGCTCGGTGACTTTGGTTGTG 1197
||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1220 TAAAACCTGACAATATTTACATTAAGAACGGTGTTTGCAAGCTTGGTGACTTTGGTTGTG 1279
Query 1198 CCACACGATTGGACAGAAGTTTACCAGTAGAAGAAGGAGATGCACGTTACATGCCTCAAG 1257
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CCACACGATTGGACAAAAGCTTACCAGTAGAAGAAGGAGATGCACGTTACATGCCTCAAG 1339
Query 1258 AAATCCTCAATGAAGACTACGACCACCTTGATAAAGTCGATATCTTTTCTTTAGGTGTAA 1317
|||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 1340 AAATTCTAAATGAAGACTACGAACACCTTGATAAAGTCGATATCTTCTCTTTAGGTGTGA 1399
Query 1318 CGGTTTACGAGCTGATTAAGGGATCTCCTCTTACAGAATCAAGAAACCAGTCCCTCAATA 1377
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1400 CGGTTTATGAGCTGATTAAGGGATCTCCTCTTACAGAATCAAGAAACCAGTCGCTCAATA 1459
Query 1378 TCAAAGAAGGCAAACTTCCTCTCCTTCCTGGCCATTCGTTGCAGTTACAACAACTGCTTA 1437
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1460 TCAAAGAAGGAAAACTTCCTCTCCTTCCTGGCCATTCGTTGCAGTTACAACAACTTCTTA 1519
Query 1438 AGACAATGATGGATCGTGATCCTATGCGTCGGCCTTCTGCTAGAGAAGTACTGGACCATC 1497
|||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 1520 AGACAATGATGGATCGTGATCCGAAGCGTCGGCCTTCTGCTAGAGAATTACTGGACCATC 1579
Query 1498 CCATGTTTGATAGGATTCGAGGTTGATTCATAG--TCTCTCAGATGTCG 1544
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1580 CCATGTTTGATAGGATTCGAGGTTGATTCATAGAGTCTCTCAGATGTCG 1628
> AT1G02965.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G02960.3);
Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:671661-672814
REVERSE LENGTH=489
Length=489
Score = 82.4 bits (44), Expect = 1e-14
Identities = 50/53 (94%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 267 TCAGATACCAATTGCGGAGAGAAGGACTTTATTCTTAGCCAAGACTTCTTCTG 319
|||| | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 489 TCAGGTGCCAATTGCGGAGATAAGGACTTTATTCTTAGCCAAGACTTCTTCTG 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76204427310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5