BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918960
Length=239
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26970.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 326 7e-89
> AT2G26970.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr2:11509721-11511914 REVERSE
LENGTH=867
Length=867
Score = 326 bits (176), Expect = 7e-89
Identities = 215/234 (92%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 7 TTT-TTACAGAAGTACATGCCAGAATTAGCTGCCCTTTTCCCTCATATACTTGTCGACGT 65
||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 467 TTTCTTAAAGAAATACATGCCAGAATTAGCTGCCCTTTTCCCTCATATACTCGTCGATGT 526
Query 66 CAGTAGCGTCAAGGCTCTATGCTCCCGATGGTTCCCCATAGAGAAAAGGAGAGCTCCTGC 125
|||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct 527 CAGTAGCGTCAAGGCTTTATGCGCCCGATGGTTCCCCATAGAGAGAAGGAAAGCTCCTGC 586
Query 126 AAAGAAAAACAACCACAGAGCCATGGATTATATAAGAGAAACCATAAAGGAACTTAAGTA 185
||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 587 CAAGAAAAACAATCACAGAGCCATGGATGATATAAGAGAAAGTATAAAGGAGCTTAAGTA 646
Query 186 CTACAAGAAAACAATATTCAAAGCAAGGAAATGAGTGGAGTTAGGTCCTGCAAT 239
|||||||||||||||||||||||| |||| |||||||||||| ||| |||||||
Sbjct 647 CTACAAGAAAACAATATTCAAAGCTAGGAGATGAGTGGAGTTGGGTACTGCAAT 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10807566035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5