BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918965

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G03020.1 | Symbols:  | Thioredoxin superfamily protein | chr...   499    6e-141


> AT1G03020.1 | Symbols:  | Thioredoxin superfamily protein | chr1:698207-698515 
REVERSE LENGTH=309
Length=309

 Score =  499 bits (270),  Expect = 6e-141
 Identities = 297/310 (96%), Gaps = 2/310 (1%)
 Strand=Plus/Plus

Query  21   ATGGAGAAGATATCAAATTTGTTAGAAGACAAGCCAGTGGTGATATTCAGCAAGACCTCG  80
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || 
Sbjct  1    ATGGAGAAGATATCAAATTTGTTAGAAGACAAGCCCGTGGTGATATTCAGCAAGACGTCC  60

Query  81   TGCTGTATGAGTCACACGATCAAGTCGCTCATATCTGGTTACGGTGCGAATCCAACGGTG  140
            ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct  61   TGCTGTATGAGTCACTCGATCAAGTCGCTTATATCTGGTTACGGTGCGAATTCAACAGTG  120

Query  141  TATGAGCTAGACGAAATGTCTAATGGATCC-GAGATCGAACGAGCACTGGTCGAGCTTGG  199
            ||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||
Sbjct  121  TATGAGCTAGACGAAATGTCTAATGGA-CCAGAGATCGAACGAGCACTTGTAGAGCTTGG  179

Query  200  GTGCAAACCGACGGTGCCAGCTGTCTTTATAGGGCAAGAGCTCGTAGGTGGTGCAAATCA  259
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  GTGCAAACCGACTGTGCCAGCTGTCTTTATAGGGCAAGAGCTCGTAGGTGGTGCAAATCA  239

Query  260  ACTTATGTCTCTTCAAGTCAGGAACCAACTAGCCTCGTTGCTCCGAAGAGCTGGAGCCAT  319
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  240  ACTTATGTCTCTTCAAGTCAGGAACCAACTAGCTTCGTTGCTCCGAAGAGCTGGAGCCAT  299

Query  320  ATGGATTTAA  329
            ||||||||||
Sbjct  300  ATGGATTTAA  309



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16387286174


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5