BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918976
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03110.1 | Symbols: TRM82, AtTRM82 | Transducin/WD40 repeat-... 2137 0.0
> AT1G03110.1 | Symbols: TRM82, AtTRM82 | Transducin/WD40 repeat-like
superfamily protein | chr1:749246-751963 FORWARD LENGTH=1564
Length=1564
Score = 2137 bits (1157), Expect = 0.0
Identities = 1256/1304 (96%), Gaps = 5/1304 (0%)
Strand=Plus/Plus
Query 18 AACAATGGAGGAAGAATCTCACACCGAAGAAGTAGAAATCCAAAACAAACTCGAAGTTGC 77
||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 110 AACAATGCAGGAAGAATCTCACATCGAAGAAGTTGAAATCCAAAACAAACTCGAAGTTGC 169
Query 78 TCCTGCATTGATTTCCGTTCATCCATCTCAGAAATCTCTCGCTGTCGCTGTCGGTTCGGA 137
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 170 TCCTGCATTGATTTCCGTTCATCCATCTCAGAAATCTGTCGCTGTCGCTGTCGGCTCGGA 229
Query 138 TCTTCGTGTATTCGATCTTATAGAGAATCGCCCAGTTAGTTTGGTGGATGAATCTGATGG 197
||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 230 TCTTCGTATTTTCGATCTTATAGAGAATTGCCCAGTTAGTTTGGTGGATGAATCTGATGG 289
Query 198 GCCT-TCCCGTAAGGAATCCATTAGGGCTATTCGTTACAGTGCAAGTGGAAAGCTCTTTG 256
|||| | |||||||||||||||||| |||||||| |||||| ||||||| ||||||||||
Sbjct 290 GCCTAT-CCGTAAGGAATCCATTAGAGCTATTCGGTACAGTACAAGTGGCAAGCTCTTTG 348
Query 257 TGTCCGCAGGCGATGACAAACTAGTTAAGATTTGGTCTGCAGATTCTTGGCGCTGTCTTA 316
||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||
Sbjct 349 TGTCCGCAGGCGATGACAAGCTTGTCAAGATTTGGTCCGCAGATTCTTGGCGCTGTCTTA 408
Query 317 ACACAGTATGTTCTGAGAAGAGAGTTAGCGCAGTTGCTATAAGTAGCGATGATTCACATG 376
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 409 ACACAGTATGTTCTGAGAAAAGAGTTAGCGCAGTTGCTATAAGTAGTGATGACTCACATG 468
Query 377 TTTGCTATGCGGACAAGTTTGGTGTTGTATGGGTGATCGAGCTGGATGGGATCAATGAGG 436
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 469 TTTGCTATGCGGACAAGTTTGGTGTTGTATGGGTGATTGAGCTGGATGGGATCAATGACG 528
Query 437 GTAAAACTTTACCTAGTAAGAAGGGTGCGCTGCTGCTTTCCCATTATTGTAGTATTATTA 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GTAAAACTTTACCTAGTAAGAAGGGTGCGCTGCTGCTTTCCCATTATTGTAGTATTATTA 588
Query 497 CTAGCCTGGAGTTTTCCCCAGATGGTAGATATATTCTTAGTGCTGATCGGGACTTTAAGA 556
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 589 CTAGCCTGGAGTTTTCCCCAGATGGTAGATATATTCTTAGTGCAGACCGGGACTTTAAGA 648
Query 557 TAAGGGTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTT 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TAAGGGTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTT 708
Query 617 GTCTTGGACATTCAGAGTTCATCACCTGCACAGCATTTGTCAGCACTCCAGAGCTTACTC 676
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 709 GTCTTGGACATTCAGAGTTCATTACCTGCACAGCATTTGTCAGCACTCCAGAGCTTACTC 768
Query 677 AGGGATACCTCATGTCTGGAAGTGGAGATTCAACTGTTCGACTGTGGGATATTACATCTG 736
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 769 AGGGATACCTCATGTCTGGAAGTGGAGATTCAACTGTTCGACTGTGGGACATTACATCTG 828
Query 737 GGTCTCTTCTTGACACATGTGAAGTCAGTACAGTGGCAGGGCATTTAGAGTTTAATGAAA 796
|||||||||| |||||||||||||| |||||||||||||| ||| ||||| ||||||||
Sbjct 829 GGTCTCTTCTCGACACATGTGAAGTTAGTACAGTGGCAGGACATGCAGAGTCTAATGAAA 888
Query 797 GTGAGTCGCTGACCCAAGTCACAGTTACCGACATATGCGCTATCCCGAATTCTTCTCTTG 856
|||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 889 ATGAGTCGCCGACCCAAGTCACAGTTACTGACATATGCGCTATCCCGAATTCGTCTCTTG 948
Query 857 CAGCAGTGGCAATTCAAAGCTTTCAAGGAATACTCTTGTTAAGCTGTGATTTGACAGCAC 916
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 949 CAGCAGTGGCAATTCAAAGCTTTCAAGGAATATTCTTGTTAAGCTGTGATTTGACAGCAC 1008
Query 917 ATACTCTCTCTATCACAAAGGTGATAAAAATCCCTGGAGAAAGTTTCATTCCTACAAGTA 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 ATACTCTCTCTATCACAAAGGTGATAAAAATCCCTGGAGAAAGTTTCATTCCTACAAGTA 1068
Query 977 TAGCTGTAAGTGCATCTTCAAAATTACTATGGATGGTATCAGGAGCCTCAAACCTGCCTG 1036
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TAGCTGTAAGTGCATCTTCAAGATTACTATGGATGGTATCAGGAGCCTCAAACCTGCCTG 1128
Query 1037 GTTCGAACCATCCTGGTTTTTCAAGGGTTCGGGTCATCTCGTGCCTTGAGACCG-A--AT 1093
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 1129 GTTCGAACCATCCTGGTTTTTCAAGGGTTCGGGTCATCTCTTGCCTTGAGACCGAATCAT 1188
Query 1094 CTTCAATCCTTGAAGACGGGCAGATTCCAGGAGGGACCAAACTGTTGGAGCAATTACAAG 1153
||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1189 CTTCAATACTTGAAGACGAGCAGATTCCAGGAGGGACCAAACTATTGGAGCAATTACAAG 1248
Query 1154 GTAAAGTTCCAATAGAAGAGAGTGTAATGAGTGCTGCGGCAGAAGCTGTGAGAGCGGCAA 1213
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GTAAAGTTACAATAGAAGAGAGTGTAATGAGTGCTGCGGCAGAAGCTGTGAGAGCGGCAA 1308
Query 1214 TGTCCAGCCTTTTGATGAAGAAGCAATACTCTGAAGAGAAGAGAGAGTTCAGAAAAAGAA 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 TGTCCAGCCTTTTGATGAAGAAGCAATACTCTGAAGAGAAGAGAGAGTTCAGAAAAAGAA 1368
Query 1274 CCAGAAATGATAAGAAAACCACACAATGATTGCATTTTGCCaaa 1317
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1369 CCAGAAATGATAAGAAAACCACACGATGATTGCATTTTGCCAAA 1412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65059906320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5