BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918980
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03150.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 935 0.0
> AT1G03150.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr1:756414-758612 FORWARD LENGTH=743
Length=743
Score = 935 bits (506), Expect = 0.0
Identities = 531/543 (98%), Gaps = 1/543 (0%)
Strand=Plus/Plus
Query 13 AAGAAGAGATGACGACGATACGTAGATTCAGCTGCAACGACCTTCTCCGATTCACTTCCG 72
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 40 AAGAAGAGATGACGACGATACGTAGATTCAGCTGCAATGACCTTCTCCGATTCACTTCCG 99
Query 73 TGAATCTGGACCACCTCACTGAAACATTCAATATGTCTTTCTACATGACCTATTTAGCGA 132
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 100 TGAATCTGGACCACCTCACTGAAACATTCAATATGTCCTTCTACATGACCTATTTAGCGA 159
Query 133 GATGGCCTGACTATTTTCATGTAGCTGAAGGTCCCGGCAATCGTGTCATGGGTTATATTA 192
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 160 GATGGCCTGACTATTTTCATGTTGCTGAAGGTCCCGGCAATCGTGTCATGGGTTATATTA 219
Query 193 TGGGTAAAGTTGAAGGACAGGGTGAATCTTGGCATGGTCATGTGACAGCCGTCACTGTCT 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TGGGTAAAGTTGAAGGACAGGGTGAATCTTGGCATGGTCATGTGACAGCCGTCACTGTCT 279
Query 253 CTCCAGAATATCGCAGGCAGCAACTCGCAAAGAAACTGATGAACCTTCTGGAAGATATCA 312
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 280 CTCCAGAATACCGCAGGCAGCAACTTGCAAAGAAACTGATGAACCTTCTGGAAGATATAA 339
Query 313 GTGACAAGATTGATAAAGCCTACTTTGTGGATCTTTTTGTAAGAGCTTCCAACACACCAG 372
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GTGATAAGATTGATAAAGCCTACTTTGTGGATCTTTTTGTAAGAGCTTCCAACACACCAG 399
Query 373 CCATCAAGATGTATGAAAAGCTTGGCTACATAATCTATAGGCGGGTTTTACGCTATTATT 432
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 400 CCATCAAGATGTATGAAAAGCTTGGATACATAATTTATAGGCGGGTTTTACGCTATTATT 459
Query 433 CAGGGGAGGAAGATGGATTAGATATGAGGAAGGCATTATCAAGAGATGTAGAGAAAAAGT 492
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 CAGGAGAGGAAGATGGATTAGATATGAGGAAGGCATTATCAAGAGATGTAGAGAAAAAGT 519
Query 493 CTGTGATTCCTCTCAAGAGACCTATCACACCTGATGAATTAGAGTATGATTAAGACAC-A 551
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 520 CTGTGATTCCTCTCAAGAGACCTATCACACCTGATGAATTAGAGTATGATTAAGACCCTA 579
Query 552 ACT 554
|||
Sbjct 580 ACT 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5