BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918982
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03170.1 | Symbols: | Protein of unknown function (DUF3049)... 1096 0.0
> AT1G03170.1 | Symbols: | Protein of unknown function (DUF3049)
| chr1:769632-770684 FORWARD LENGTH=1053
Length=1053
Score = 1096 bits (593), Expect = 0.0
Identities = 727/788 (92%), Gaps = 23/788 (3%)
Strand=Plus/Plus
Query 1 TTTCTGAAGAACATATAAAAATGTCACTTGTTGTTTGTCAACCTCAAGATAACATCGTTC 60
||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 154 TTTCTAAAGAACATAGAAAAATGTCACTTGTTGTTTGTCAACCTCAA-ATAA-A------ 205
Query 61 CGAAGAATCAAAGTTTCTATCAAAAAGATGACATGGGTGGGTTGAGTTTCCTGCAATCTA 120
|| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 206 CG-AG------AGTTTCTATCAAAAAGATGACATGGGTGGGTTGAGTTTCCTACAATCTA 258
Query 121 TGTCCGACATCACTGCCATTGTCCAAACCAAAGAGGATAAAGCTTATGTTCACCCGATGG 180
||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 259 TGTCCGATATCACTTCCATTGCCCAAACCAAAGAGGATAAAGCTTATGTTCACCCGATGG 318
Query 181 AGAAACGCTCTGTTTCTAAGCTCAATGAGAAAAGCTTAGAGATGTGCACTGAGAGTCTCG 240
||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||
Sbjct 319 AGAAACGCTCTGTTTCTAAACTGAACGAGAAAAGCTTGGAGATGTGCACTGAGAGTCTCG 378
Query 241 GAACCGAAACAGGAAGCGAGAGTGGTGACGAGTTATCATTGCTTGCGTTTGAAGCAGCCA 300
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 379 GAACCGAAACAGGAAGCGAGAGTGGTGACGAGTTGTCATTGCTTGCGTTTGAAGCAACCA 438
Query 301 CTACTCCTAGGG-T--TCCTCTTCAGCTGAAACCACGAGAAGATACTAACTTGACGGACA 357
|||||||||||| | ||||| ||| |||||||| | |||||||||||||||| ||||||
Sbjct 439 CTACTCCTAGGGCTCCTCCTCGTCAACTGAAACCTCAAGAAGATACTAACTTGCCGGACA 498
Query 358 AGAAATCGCCGATG-GTTCGCAACAACAGTTTCCCGCCGCCGATAAAGTTCGTTGAAGAC 416
||| | |||||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 499 AGACACCGCCGATGAG-TCGCAACAACAGTTTCCCACCGCCGATAAAGTTCGTTGAAGAC 557
Query 417 TCAAAGTATAATCGTATGGTGAGATGGTTAGGAGAAGATGGTCGACTTGTAGTTCAAGCA 476
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 558 TCAAAGTATAATCGTATGGTGAGATGGTTAGGAGAAGATGGTCGAATTGTAGTTCAAGCA 617
Query 477 ATTAGGGCTTCGTCTCCGCCTAGTTGCTTTGTAGCTGAACGTGGTGAAGGAAGGCTTCGT 536
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 618 ATTAGGGTTTCGTCTCCGCCTAGTTGCTTTGTATCAGAACGTGGTGAAGGAAGGCTTCGT 677
Query 537 CTCATGTTAACGTCGGAAAGTTCTCTTCTTAGTCACAGTCATGAGGAGGAGGAGGAAGAA 596
||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| | |||
Sbjct 678 CTCATTTTAACGTCGGAAAGTTCTCTTCTTAGTCACAATCACGAGGAGGAGGA--A-GAA 734
Query 597 GAAGAAACAGAGGAGGGCATCGATGAGGAAACTAGTGATATCATGGAGGGTAAAAATGGA 656
||||||||||||||||||||||| |||||||||||||| | | |||||||||||| ||||
Sbjct 735 GAAGAAACAGAGGAGGGCATCGACGAGGAAACTAGTGAGAACTTGGAGGGTAAAAGTGGA 794
Query 657 AATAAAAAGTTTAGCAGATTAAGCAGAAGATGCAAGGAGAATGGTCGTGAGCCTAAACCA 716
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 795 AATAAAAAGTTTAGCAGATTCAGCAGAAGATGCAAGGAGAATGGTCGTGAGCCTAAACCA 854
Query 717 ATGCTTACTTGGAAGCAGCAGCACTTTTGGGTCGCTACTTCAACTTAATTCGACTAATTA 776
||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |||||||
Sbjct 855 ATGCTCACTTGGAAGCAGCAGCAGTTTTGGGTCGCTACTTAAACTTAATTCGGCTAATTA 914
Query 777 ACGTGGGT 784
| ||||||
Sbjct 915 ATGTGGGT 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5