BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918991
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03260.1 | Symbols: | SNARE associated Golgi protein family... 1648 0.0
> AT1G03260.1 | Symbols: | SNARE associated Golgi protein family
| chr1:795532-798463 REVERSE LENGTH=1332
Length=1332
Score = 1648 bits (892), Expect = 0.0
Identities = 946/973 (97%), Gaps = 0/973 (0%)
Strand=Plus/Plus
Query 1 TGGAGGGCCTAAGGGCGAGGCCATGGCTTAAGCCAGGAGCTTGTATAAATGGAGATCAAT 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 234 TGGAGGGCCTAAGGGCGAGGCCGTGGCTTAAGCCAGGAGCTTGTATAAATGGAGATCAAT 293
Query 61 ATGACTACGACGGTGCGGAAGACGACCATTCCAGGCCTTGGTGGCGTCGTCGTCTCAGAT 120
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 294 ATGACTACGACGGTTCGGAAGACGACCATTCCAGGCCTTGGTGGCGCCGTCGTCTCAGAT 353
Query 121 CCTTGTATATGGCGGCCATGTCCTTTACTCCGTCCACTTTCCGAATCGCAATCTCGTTGC 180
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 354 CCTTGTATATGGCAGCCATGTCCTTTACTCCGTCCACTTTTCGAATCGCTATCTCGTTGC 413
Query 181 TCCTTCTTGTTGCTATCGTCACCGCCGTCATTTTTCTCCCGGTCGAACAGAAATTGAAGG 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 414 TCCTTCTTGTTGCTATCGTCTCCGCCGTCATTTTTCTCCCGGTCGAACAGAAATTGAAGG 473
Query 241 ACTTCTTGTTATGGATTAAGGAAGATCTTGGACCTTTTGGTCCACTTGCATTGGCTTTGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ACTTCTTGTTATGGATTAAGGAAGATCTTGGACCTTTTGGTCCACTTGCATTGGCTTTGG 533
Query 301 CTTATATTCCTCTCACAATTGTCGCAGTTCCTGCTTCTGTACTCACGCTAGGTGGTGGTT 360
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 534 CTTATATTCCTCTCACAATTGTGGCGGTTCCTGCTTCTGTACTCACGCTAGGTGGTGGTT 593
Query 361 ACCTTTTTGGCCTGCCAGTAGGATTTGTAGCCGACTCTCTTGGAGCTACATTAGGTGCGA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 594 ACCTTTTTGGCCTGCCAGTAGGATTTGTAGCCGACTCTCTTGGAGCTACATTAGGTGCAA 653
Query 421 CAGCGGCATTTCTGCTTGGTAGAACGATTGGTAAATCTTATGTCACCTCAAAAATAAAGC 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 654 CAGCGGCATTTCTGCTTGGTAGAACGATTGGTAAATCTTATGTCACTTCAAAAATAAAGC 713
Query 481 ATTATCCAAAGTTTCAAGCTGTTTCCGTTGCAATTCAGAAATCTGGCTTCAAGATAGTCT 540
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 714 ATTACCCAAAGTTTCAAGCTGTTTCCGTTGCAATTCAAAAATCTGGCTTCAAGATAGTCT 773
Query 541 TGCTGCTACGCGTTGTCCCCATACTGCCCTTCAATATGTTGAATTACCTCCTATCTGTAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGCTGCTACGCGTTGTCCCCATACTGCCCTTCAATATGTTGAATTACCTCCTATCTGTAA 833
Query 601 CCCCTGTTCGCTTAGGGGAATACATGCTGGCCACTTGGTTGGGAATGATGCCCATTACGT 660
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 834 CTCCTGTTCGCTTAGGGGAATACATGCTGGCCACTTGGTTGGGAATGATGCCCATTACAT 893
Query 661 TTGCGCTAGTTTATGTTGGAACAACTCTGAAAGATCTTTCTGATATTACACATGGATGGC 720
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 894 TTGCGCTAGTATATGTTGGAACTACTCTGAAAGATCTTTCTGATATTACACATGGATGGC 953
Query 721 ATGAGGTGTCAGCATTTCGTTGGGTAATTATGATGGTTGGCGTTGCTCTAGCTGTAATTC 780
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 954 ATGAGGTGTCAGTATTTCGTTGGGTAATTATGATGGTTGGCGTAGCTCTAGCTGTAATTC 1013
Query 781 TGATAATATGCATAACAAGAGTGGCTAAATCATCCTTGGACAAAGCATTGGCTGAGAATG 840
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1014 TGATAATATGCATAACAAGAGTGGCGAAATCATCCTTGGACAAAGCATTGGCTGAGAATG 1073
Query 841 GTCCTGATTTAGATGGGAAGAAGAATGACGATGCTTCCGTGCTCCCGATCGCAGAGCCAC 900
|| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1074 GTACTGAATTAGATGGGAAGAAGAATGACGACGCTTCCGTACTCCCGATCGCAGAGCCAC 1133
Query 901 CACCGGATCTACACGAGCCTCTCGTTATCAGGATCGACCCATCCAATACTTGAATAATAT 960
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1134 CACCGGATCTACAAGAGCCTCTCGTTATCAGAATCGACCCATCCAATACTTGAATAATAT 1193
Query 961 AGACCAGAAGAAA 973
|||| ||||||||
Sbjct 1194 AGACAAGAAGAAA 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5