BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918994
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03280.1 | Symbols: | Transcription factor TFIIE, alpha sub... 2414 0.0
AT4G20340.1 | Symbols: | Transcription factor TFIIE, alpha sub... 1306 0.0
AT4G20810.1 | Symbols: | transcription initiation factor IIE (... 497 1e-139
> AT1G03280.1 | Symbols: | Transcription factor TFIIE, alpha subunit
| chr1:803035-807066 FORWARD LENGTH=1901
Length=1901
Score = 2414 bits (1307), Expect = 0.0
Identities = 1429/1489 (96%), Gaps = 4/1489 (0%)
Strand=Plus/Plus
Query 1 TGTAAGTATTTGGGTTGTTAAGTCCATGGAAAAATCAGGCCCTGTGCAGAAAGCCGTTGT 60
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 129 TGTAAGTATTTGGGTTGTTAACTCCATGGAAAAATCAGGCCCGGTGCAGAAAGCCGTTGT 188
Query 61 GCTCCAGCCATTTGTCAAGCTGGTGAGGCTTGTCGCGAGGGCTTTCTATGATGATTATAC 120
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 189 TCTCCAGCCATTTGTCAAGTTGGTGAGGCTTGTAGCGAGGGCTTTCTATGATGATTATAC 248
Query 121 TACGAAAAGCGATCATCAGCAGAAATCTGCAAGAAGTGACAACAGAGGGATTGCCGCTGT 180
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 249 TACGAAAAGCGATAATCAGCAGAAATCTGCTAGAAGTGACAACAGAGGGATTGCCGCTGT 308
Query 181 GGTGCTAGACGCCCTGGCGAGGCGGCAATGGGTTAGAGAAGAAGATTTGGCAAAAGATTT 240
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 309 GGTGCTAGACGCGCTGGCAAGGCGGCAATGGGTTAGAGAAGAAGACTTGGCAAAAGATTT 368
Query 241 GCAATTGCACGCCAAGCAACTTCGAAAAATAATAAGACTCTTTGAAGAAGAAAAGTTGAT 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GCAGTTGCACGCCAAGCAACTTCGAAAAATAATAAGACTCTTTGAAGAAGAAAAGTTGAT 428
Query 301 TATGCGTGACCACCGGAAAGAGACTGCAAAGGGGGCAAAGATGTATAGTGCTGCAGTGGC 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 429 TATGCGTGACCACCGGAAAGAGACTGCAAAGGGTGCAAAGATGTATAGTGCTGCAGTGGC 488
Query 361 TGCTACAACTGATGGCCGAGCAGAGGACAAAGTTAAGCTTCACACCCACTCGTATTGTTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 489 TGCTACAACTGATGGCCGAGCAGAGGACAAAGTTAAGCTTCACACCCACTCGTATTGCTG 548
Query 421 TCTCGATTATGCACAGATATGTGATGTTGTTCGTTTTAGACTGCATCGGATGaaaaaaaG 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 549 TCTCGATTATGCACAGATATGTGACGTTGTTCGTTTTAGACTGCATCGGATGAAAAAAAG 608
Query 481 GCTCAAAGATGAGCTAGAAGATAAGAATACTGTTCAGGAGTATGGCTGTCCTAACTGCCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GCTCAAAGATGAGCTAGAAGATAAGAATACTGTTCAGGAGTATGGCTGTCCTAACTGCCA 668
Query 541 AAGAAAATATAATGCGCTGGATGCTCTGAGATTAATTTCTATGGAAGACGATTCTTTTCA 600
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 669 AAGGAAATATAATGCGCTGGATGCTCTGAGATTAATTTCTATGGTAGACGATTCTTTTCA 728
Query 601 TTGTGAAAATTGCAATGGTGAACTTGTTGTGGAATGTAACAAGCTAACTTCCGAAGAAGT 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 729 TTGTGAAAATTGCAATGGTGAACTTGTTGTGGAATGCAACAAGCTAACTTCCGAAGAAGT 788
Query 661 TGTTGATGGAGATGATAATGCAAGGAGACGGCGGCGGGaaaaactaaaaaaTATGCTTCA 720
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 789 AGTTGATGGAGATGATAATGCAAGGAGACGGCGGCGGGAAAACCTAAAAAATATGCTTCA 848
Query 721 GAAGTTGGAGGTTCAAATGAAACCTCTGATGGATCAGTTAAATAGAGTAAAAGACCTACC 780
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GAAATTGGAGGTTCAAATGAAACCTCTGATGGATCAGTTAAATAGAGTAAAAGACCTACC 908
Query 781 AATTCCTGAATTTGGATCTTTTCTGGCATGGGAGGCTCGTGCAGCTATGGCTGCTCGCGC 840
||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 909 AATACCTGAATTTGGATCTTTTCTGGCATGGGAGGCCCGTGCAGCGATGGCTGCTCGCGA 968
Query 841 GAATGGTGATCTTAACCCTAATGATCCTTTGAGGTCACAGAGTGGGTATGGTTCAACACC 900
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 969 GAATGGTGATCTTAACCCTAATGATCCTTTGAGGTCACAGGGCGGGTATGGTTCAACACC 1028
Query 901 AATGCCATTTCTCGGAGAGACAAAGGTTGAGGTTAACCTTGGCGATGGAAACGAAGATGT 960
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1029 AATGCCATTTCTCGGAGAGACAAAGGTTGAGGTTAACCTAGGTGATGGAAACGAAGATGT 1088
Query 961 TAAATCTAAAGGTGGAGATTCCAGTCTGAAAGTCTTGCCTCCATGGATGATCAAGGAAGG 1020
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TAAATCTAAAGGTGGAGACTCCAGTCTGAAAGTCTTGCCTCCATGGATGATCAAGGAAGG 1148
Query 1021 AATGAATCTGACCGAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAAGGTTGATGGTGG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 AATGAATCTGACCGAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAAGGTTGATGGTGG 1208
Query 1081 CTCAAGAGGAGCAGCAAAACTTTCAGAAGACAAGAAATCAGCCAGTGGAAATGGAGATGA 1140
|| ||| |||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1209 GGCAGGAGCAGCAGCAAAACTTTCAGATGACAAGAAATCAGCCATTGGAAATGGAGATGA 1268
Query 1141 GAAGGATTTGAAGGATGAGTATCTCAAAGCTTACTACTTAGAACTTCTGAAGCAGCAAGA 1200
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1269 GAAGGATTTGAAGGATGAGTATCTCAAAGCTTACTACGCCGAACTTATGAAGCAGCAAGA 1328
Query 1201 GCTTGCTGCAAGACGAAATCAACAAGAATCCGCTGGCGAATCAGCTTCTGACATCCAGTT 1260
|||||||||||| ||||||||||||||||||||||| ||| || |||||| ||| ||||
Sbjct 1329 GCTTGCTGCAAGGCGAAATCAACAAGAATCCGCTGGTGAACCAACTTCTGGCATTCAGTC 1388
Query 1261 GGGTACTACATCCTCAGGTCGTCAGGTTAGTATGAAGGCCAAACGtgaagaagaagatga 1320
||||||| || ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1389 GGGTACTGTATACTCAGGTCGTCAGGTTAGTATGAAGGCCAAACGTGAAGA-G--GATGA 1445
Query 1321 agacgaagatgaagaagatgttgaatgggaagaaaagGCTCCTGTTGCAGCTAATGGAAA 1380
|||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||
Sbjct 1446 AGACGAAGATGAAGAAGAAGTAGAATGGGAAGAAAAGGCTCCTGTTACTGCTAATGGAAA 1505
Query 1381 CTACAAGGTGGACTTGAATGTGGAAGCAGAAGCTTCGGGTGGTGAAGAAGAAGAAGAGGA 1440
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 CTATAAGGTGGACTTGAATGTGGAAGCAGAAGCTTCGGGTGGTGAAGAAGAAGAAGAGGA 1565
Query 1441 AGACGACATCGATTGGGAAGAAGGCTGAAAG-CAAATGGATCAACCATT 1488
||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1566 AGACGACGTCGATTGGGAAGAAGGCTGAAAAACAAATGGATCAACCATT 1614
> AT4G20340.1 | Symbols: | Transcription factor TFIIE, alpha subunit
| chr4:10984707-10987748 FORWARD LENGTH=1547
Length=1547
Score = 1306 bits (707), Expect = 0.0
Identities = 1235/1481 (83%), Gaps = 72/1481 (5%)
Strand=Plus/Plus
Query 17 GTTA-AGTCCATGGAAAAATCAGGC-C-CT-GTGCAGAAAGCCGTTGTGCTCCAGCCATT 72
|||| | |||||||| |||||| | | | |||| |||| ||||||||||| |||| ||
Sbjct 110 GTTATATTCCATGGACAAATCAATCACGGTGGTGCGGAAAACCGTTGTGCTCGAGCCGTT 169
Query 73 TGTCAAGCTGGTGAGGCTTGTCGCGAGGGCTTTCTATGATGATTATACTACGAAAAGCGA 132
||||||||||||||||||| | | ||| ||||||||| |||||||| || |||||||
Sbjct 170 TGTCAAGCTGGTGAGGCTTTTAGTAAGGATTTTCTATGACAATTATACTCCGGAAAGCGA 229
Query 133 TCATCAGCAGAAATCTG-CAAGAAGTGACAACAGAGGGATTGCCGCTGTGGTGCTAGACG 191
| ||||||||||||||| || || || | | ||| | ||| | | | ||||| ||||
Sbjct 230 TAATCAGCAGAAATCTGTGAA-AAATG-TTA-A-AGGTAGTGCTGTTATCGTGCTGGACG 285
Query 192 CCCTGGCGAGGCGGCAATGGGTTAGAGAAGAAGATTTGGCAAAAGATTTGCAA-TTGCAC 250
| || |||||||||||||||||||||||||||| ||||||||||| || || | |
Sbjct 286 CGCTTACGAGGCGGCAATGGGTTAGAGAAGAAGACTTGGCAAAAGAGGTG-AAGCGGAAT 344
Query 251 GCCAAGCAACTTCGAAAAATAATAAGAC-TCTTTGAAGAA-GAAAAGTTGATTATGCGTG 308
|||||| | ||||||||| ||||||||| | ||||||||| |||| ||| | ||||||
Sbjct 345 GCCAAGGAGCTTCGAAAATTAATAAGACAT-TTTGAAGAACAAAAATTTG-TCATGCGTT 402
Query 309 ACCACCGGAAAGAGACTGCAAAGGGGGCAAAGATGTATAGTGCTGCAGTGGCTGCTACAA 368
||||| ||||||||||||||||| | || |||||||||||| |||||||| || |||||
Sbjct 403 ACCACAGGAAAGAGACTGCAAAGCGTGCGAAGATGTATAGTTATGCAGTGGGTGGTACAA 462
Query 369 CTGATGGCCGAGCAGAGGACAAAGTTAAGCTT-CACACCCACTCGTATTGTTGTCTCGAT 427
|||||||||||||||||||||| |||||| || ||||| ||||||||||| ||||| |||
Sbjct 463 CTGATGGCCGAGCAGAGGACAATGTTAAG-TTCCACACGCACTCGTATTGCTGTCTTGAT 521
Query 428 TATGCACAGATATGTGATGTTGTTCGTTTTAGACTGCATCGGATGaa-aaaaaGGCTCAA 486
||||||||||||| |||| ||||||||| || |||||| ||| | || ||||| | ||||
Sbjct 522 TATGCACAGATATATGATATTGTTCGTTATAAACTGCACCGGCTCAAGAAAAA-GTTCAA 580
Query 487 AGATGAGCTAGAAGATAAG-AATACTGTTCAGGAGTATGGCTGTCCTAACTGCCAAAGAA 545
|||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 581 AGATGAACTAGAAGA-CAGAAATACTGTTCAGGAGTATGGCTGTCCTAACTGCAAAAGAA 639
Query 546 AATATAATGCGCTGGATGCTCTGAGATTAATTTCTATGGAAGACGATTCTTTTCATTGTG 605
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 640 AATATAATGCACTGGATGCCCTGAGATTAATTTCTATGGAAGACGATTCTTTTCATTGTG 699
Query 606 AAAATTGCAATGGTGAACTTGTTGTGGAATGTAACAAGCTAACTTCCGAAGAAGTTGTTG 665
||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |
Sbjct 700 AAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCTAATTTCCGAAGAAGTAGTAG 759
Query 666 ATGGAGATGATAATGCAAGGAGACGGCGGCGGGaaaaactaaaaaaTATG-CTTCAGAAG 724
|| ||| ||| |||||||||||||||| |||||| ||| ||||| | || |||||| |
Sbjct 760 ATAGAGGTGACAATGCAAGGAGACGGCAGCGGGAGAAAGTAAAAGTT-TGGCTTCAGGAT 818
Query 725 TTGGAGGTTCAAATGAAACCTCTGATGGATC-AGTTAAATAGAGTAAAAGACCTACCAAT 783
||||||| | || ||||||| |||||||| | | | ||||||||||||||||||||| |
Sbjct 819 TTGGAGGGTGAACTGAAACCCCTGATGGAACTAAT-AAATAGAGTAAAAGACCTACCG-T 876
Query 784 TCC-TGAATTTGGATCTTTTCTGGCATGGGAGGCTCGTGCAGCTATGGCTGCTCGCGCGA 842
||| || |||| | |||||| ||||||||| ||||||||||||| ||||||||| | |
Sbjct 877 TCCCTGCCTTTGAACCTTTTCCGGCATGGGAAGCTCGTGCAGCTAAGGCTGCTCGTGAAA 936
Query 843 ATGGTGATCTTAACCCTAATGATCCTTTGAGGTCACAGAGTGGGTATGGTTCAACACCAA 902
|||||||| |||||||| ||||||||| ||||| | | || ||||||||||||||||
Sbjct 937 ATGGTGATTTTAACCCTGATGATCCTTCAAGGTCTTTGGGCGGATATGGTTCAACACCAA 996
Query 903 TGCCATTTCTCGGAGAGACAAAGGTTGAGGTTAACCTTGGCGATGGAAACGAAGATGTTA 962
|||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 997 TGCCATTTCTGGGAGAGACAAAGGTTGAGGTTAACCTTGGTGAAGGAAATGAAGATGTCA 1056
Query 963 AATCTAAAGGTGGAGATTCCAGTCTGAAAGTCTTGCCTCCATGGATGATCAAGGAAGGAA 1022
||||| |||||||||||| || |||||| | ||||||||||||||||||||| |||| |
Sbjct 1057 CATCTACAGGTGGAGATTCTAGCCTGAAAATGTTGCCTCCATGGATGATCAAGCAAGGCA 1116
Query 1023 TGAATCTGACCGAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAAGGTTGATGGTGGCT 1082
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1117 TGAAGCTGACCGAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAATGTTGATGG----- 1171
Query 1083 CAAGAGGAGCAGCAAAACTTTCAGAAGACAAGAAATCAGCCAGTGGAAA-TGGAGATGAG 1141
| || |||||||||||||||||| ||||||||||||| || |||||| ||| |||||
Sbjct 1172 -A-GA--AGCAGCAAAACTTTCAGATGACAAGAAATCAGTCA-TGGAAAATGGCGATGAT 1226
Query 1142 AAG---GATTTGAAGGATGAGTATCTCAAAGCTTACTACTTAGAACT-TC-TGAAGCAGC 1196
|| ||||||||||||||||||||||||||||||||| | || | || ||||||
Sbjct 1227 AATAAAGATTTGAAGGATGAGTATCTCAAAGCTTACTACGCCG--CTATAATGGAGCAGC 1284
Query 1197 AAGAGCTTGCTGCAA-GAC-GAAATCAACAAGAATCCGCTGGCGAATCAGCTTC---TGA 1251
|| |||||||||||| | | ||| | | ||||||||||| ||||||||| | | |||
Sbjct 1285 AAAAGCTTGCTGCAAAG-CTGAA-TGAGCAAGAATCCGCAGGCGAATCAACAACCACTGA 1342
Query 1252 CATCCAGTTGGGTACTACATCCTCAGGTCGTCAGGTTAGTATGAAGGCCAAACGtgaaga 1311
||| | | || |||||||| ||||| |||||| ||| |||||||| ||||||| |||||
Sbjct 1343 CATTGAATCGGCTACTACATACTCAGATCGTCAAGTTGGTATGAAGTCCAAACGCGAAGA 1402
Query 1312 agaagatgaagacgaagatgaagaagatgttgaatgggaagaaa-agGCTCCTGTTGCAG 1370
| || | || | || | || |||||||||||||||| || || |||||||||
Sbjct 1403 -G--GA--A-GA--A-GA--A-GA---TGTTGAATGGGAAGAAGGAG-CTTCTGTTGCAG 1446
Query 1371 CTAATGGAAACTACAAGGTGGACTTGAATGTGGAAGCAGAAGCTTCGGGTGGTGAAGAAG 1430
| |||||||||||||||||||| ||||||||||||||||||| | | | ||||||
Sbjct 1447 CAAATGGAAACTACAAGGTGGATTTGAATGTGGAAGCAGAAGAGGCAGAAGAAAAAGAAG 1506
Query 1431 AAGAAGAGGAAGA---CGACATCGATTGGGAAGAAGGCTGA 1468
| | ||| ||||| ||||||||| |||||||||||||||
Sbjct 1507 ATGGAGACGAAGATGACGACATCGACTGGGAAGAAGGCTGA 1547
> AT4G20810.1 | Symbols: | transcription initiation factor IIE
(TFIIE) alpha subunit family protein / general transcription
factor TFIIE family protein | chr4:11141427-11143597 REVERSE
LENGTH=1251
Length=1251
Score = 497 bits (269), Expect = 1e-139
Identities = 431/506 (85%), Gaps = 23/506 (5%)
Strand=Plus/Plus
Query 595 TTTTCATTGTGAAAATTGCAATGGTGAACTTGTTGTGGAATGTAACAAGCTAACTTCCGA 654
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 444 TTTTCATTGTGAAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCTAACTTCCGA 503
Query 655 AGAAGTTGT--T-GATGGA-GATGATAATGCAAGGAGACGGCGGCGGGaaaaactaaaaa 710
|||||| || | |||||| | ||| ||| ||||||| |||||| | | | ||||||
Sbjct 504 AGAAGTAGTAGTAGATGGAAG-TGACAATCCAAGGAGTCGGCGG-G--ATCATCTAAAAG 559
Query 711 aTATGCTTCAGAAGT-TGGAGGTTCAAATGAAACCTCTGATGGATCAGT-TAAATAGAGT 768
|| |||||||||| | ||||||||| | ||||||||||||||||||| | |||| ||| |
Sbjct 560 ATTTGCTTCAGAA-TATGGAGGTTCGACTGAAACCTCTGATGGATCA-TATAAACAGAAT 617
Query 769 AAAAGACCTACCAATTCCT-GAATTTGGATCTTTTCTGGCATGGGAGGCTCGTGCAGCTA 827
|||||||||||| ||||| | |||| |||||||| |||||||||| |||||| |||||
Sbjct 618 AAAAGACCTACCGGTTCCTAGC-TTTGAATCTTTTCCGGCATGGGAGACTCGTGTAGCTA 676
Query 828 TGGCTGCTCGCGCGAATGGTGATCTTAACCCTAATGATCCTTTGAGGTCACAGAGTGGGT 887
||||||||| | |||||||| ||||||||| ||||| |||||||| ||||| ||||||
Sbjct 677 AGGCTGCTCGTGAAAATGGTGACCTTAACCCTGATGATACTTTGAGGCCACAGGGTGGGT 736
Query 888 ATGGTTCAACACCAATGCCATTTCTCGGAGAGACAAAGGTTGAGGTTAACCTTGGCGATG 947
||||||||||||| ||||||||||||||||||||| || |||||||||||||||| || |
Sbjct 737 ATGGTTCAACACCGATGCCATTTCTCGGAGAGACAGAGATTGAGGTTAACCTTGGTGAAG 796
Query 948 GAAACGAAGATGTTAAATCT-A--AAGGTGGAGATTC--C-AGTCTGAAAGTCTTGCCTC 1001
|||||||||||| |||||| | ||| ||||||||| | || |||| || ||||
Sbjct 797 AAAACGAAGATGTCAAATCTGATGAAGTTGGAGATTCTTCTAGAAGGAAACTCACGCCTT 856
Query 1002 CATGGATGATCAAGGAAGGAATGAATCTGACCGAGGAACAAAGAGGAGAGATGAGACAGG 1061
||||| |||||||| |||||||||||||| |||| |||||||||||||| || ||||| |
Sbjct 857 CATGGTTGATCAAGAAAGGAATGAATCTGTCCGATGAACAAAGAGGAGAAATAAGACATG 916
Query 1062 AAGCAAAGG-T--TGATGGTGGCTCA 1084
||||||||| | |||||||||||||
Sbjct 917 AAGCAAAGGCTGATGATGGTGGCTCA 942
Score = 163 bits (88), Expect = 4e-39
Identities = 173/212 (82%), Gaps = 14/212 (7%)
Strand=Plus/Plus
Query 1126 TGGA-AATGGAGATGA-GA-AGG-ATTTGAAGGATGAGTATCTCAAAGCTTACTACTTAG 1181
|||| ||||| ||||| || ||| |||||||||||||||||||||||||||||||| |
Sbjct 947 TGGAGAATGGTGATGATGATAGGAATTTGAAGGATGAGTATCTCAAAGCTTACTACGCGG 1006
Query 1182 AACT-T-CTGAAGCAGCAAGAGCTTGCTGCAA-GAC-GAAATCAACAAGAATCCGCTGGC 1237
|| | ||| || |||||||||| |||| || | | ||| ||| ||||||||||| |||
Sbjct 1007 --CTATACTGGAGGAGCAAGAGCTAGCTGAAAAG-CTGAA-TCAGCAAGAATCCGCAGGC 1062
Query 1238 GAA-TCAGCTTCTGACATCCAGTTGGGTACTACATCCTCAGGTCGTCAGGTTAGTATGAA 1296
|| | | | ||||||| | |||| |||| ||||||||| |||||||||| |||||||
Sbjct 1063 AAAGTAA-CAACTGACATTGAATTGGCTACTTCATCCTCAGATCGTCAGGTTGGTATGAA 1121
Query 1297 GGCCAAACGtgaagaagaagatgaagacgaag 1328
| ||||||||||||| ||||| ||||| ||||
Sbjct 1122 GTCCAAACGTGAAGAGGAAGAAGAAGAAGAAG 1153
Score = 91.6 bits (49), Expect = 2e-17
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1358 GCTCCTGTTGCAGCTAATGGAAACTACAAGGTGGACTTGAATGTGGAAGCAGAAG 1412
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 GCTTCTGTTGCAGCAAATGGAAACTACAAGGTGGACTTGAATGTGGAAGCAGAAG 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5