BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918995
Length=491
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11964.1 | Symbols: | RNA binding;RNA binding | chr3:379395... 211 5e-54
AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-172... 148 4e-35
AT4G25570.1 | Symbols: ACYB-2 | Cytochrome b561/ferric reductas... 121 8e-27
AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-171... 100 1e-20
> AT3G11964.1 | Symbols: | RNA binding;RNA binding | chr3:3793957-3806626
REVERSE LENGTH=5691
Length=5691
Score = 211 bits (114), Expect = 5e-54
Identities = 131/139 (94%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 72 GACAGTAAATGCTGGTGGGCAGCCAAAATCTGAATCATATGACTTAAAGAAATTCCATGT 131
|||||||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||
Sbjct 4242 GACAGTAAATGCTGGTGGGCGGCCAAAATCTGAATCTTATGACTTGAAGAAACTCCATGT 4301
Query 132 TGGAGATATGATTAT-TGGGAGAATCAAACGTGTGGAGCCCTATGGCTTATTCATTGACA 190
||||||||||||| | ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 4302 TGGAGATATGATT-TCTGGGAGAATCAGACGTGTGGAGCCCTTTGGCTTATTCATTGACA 4360
Query 191 TTGATCAAACTGGCATGGT 209
|||||||||||||||||||
Sbjct 4361 TTGATCAAACTGGCATGGT 4379
> AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-1725182
REVERSE LENGTH=2829
Length=2829
Score = 148 bits (80), Expect = 4e-35
Identities = 101/111 (91%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 208 GTGAAAAAGAAGACTATAGCTGCAAGACGGAGTCAAGTGAAAATGATTATACTCCCAGAG 267
|||||| |||||||||||||||||||||||||||||||||| |||| ||| |||| |||
Sbjct 2656 GTGAAAGAGAAGACTATAGCTGCAAGACGGAGTCAAGTGAAGGTGATAATATTCCCTGAG 2715
Query 268 GCTAACCGGAAAGATTTTGATGAGCTGGCG-GAAAACGTGAAAGAAGTGCT 317
|||||||||| ||||||||||||||||||| |||| ||||||||||| |||
Sbjct 2716 GCTAACCGGAGAGATTTTGATGAGCTGGCGAGAAA-CGTGAAAGAAGGGCT 2765
> AT4G25570.1 | Symbols: ACYB-2 | Cytochrome b561/ferric reductase
transmembrane protein family | chr4:13053686-13055623 REVERSE
LENGTH=1026
Length=1026
Score = 121 bits (65), Expect = 8e-27
Identities = 78/84 (93%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 408 TCAACTTCACGGCCATTATCACTATTCTCTTTGGTACCTTTGTGGTACTCACTGCTTCTG 467
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 695 TCAACTTCACGGCCATTATCACTATTCTCTTTGGTGCCTTTGTGGTACTCACTGCTTCTG 754
Query 468 CTAAGTCTTCTTCCTTCCTCCTCC 491
|| ||||| |||| | ||| ||||
Sbjct 755 CTGAGTCTCCTTC-T-CCTTCTCC 776
> AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-1719608
REVERSE LENGTH=2775
Length=2775
Score = 100 bits (54), Expect = 1e-20
Identities = 91/109 (83%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 215 AGAAGACTATAGCTGCAAGACGGAGTCA-AGTGAAAATGATTATACTCCCAGAGGCTAAC 273
|||||||||||||||||||||||||||| | | || | || ||| |||| || || ||
Sbjct 2609 AGAAGACTATAGCTGCAAGACGGAGTCAGA-TCAAGACAATAATATTCCCGGAAGCAAAT 2667
Query 274 CGGAAAGATTTTGATGAGCTGGCGGAAAACGTGAAAGAAGTGCTTGATG 322
|||| ||| ||||| ||||| ||||||||| ||||||||| ||||||||
Sbjct 2668 CGGAGAGACTTTGAGGAGCTTGCGGAAAACATGAAAGAAGGGCTTGATG 2716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23409112502
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5