BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg919001 Length=1245 Score E Sequences producing significant alignments: (Bits) Value AT1G03340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1120 0.0 > AT1G03340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02920.1); Has 44 Blast hits to 41 proteins in 13 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:819662-821317 FORWARD LENGTH=1298 Length=1298 Score = 1120 bits (606), Expect = 0.0 Identities = 706/753 (94%), Gaps = 12/753 (2%) Strand=Plus/Plus Query 494 TGCAAAGCCGCTT-TTGGATCTCATGGTGGATGGTAACATTCTGTTCTCAAGTAGCAGAG 552 |||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 488 TGCAAAGCCG-TTATTGGATCTCATGGTGGATGCTAACATTCTGTTCTCAAGTAGCAGAG 546 Query 553 CTGAATTTAATGATTTGGTCTCTACGGCAGCTGAGTTTCATAGGTTAAGGAACTCAACAA 612 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 547 CTGAATTGAATGATTTGGTCTCTACGGCAGCTGAGTTTCATAGATTAAGGAACTCAACAA 606 Query 613 GATGGAGAAAGCTCTCACGGCTTGTCCCGCAGTTTCAGCGATTCGACAGTGAAGCACTAA 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 607 GATGGAGAAAGCTCTCACGGCTTGTCCCGCAGTTTCAGCGATTCGACAGTGAAGTACCAA 666 Query 673 TAGACACTTTGCAGCTATCCGCGGTTAAGCCTGATGCAGTTACACTTGCTCCTCTTAAGA 732 |||||||| |||||||| || | | || || ||||||||||| ||||||| |||| Sbjct 667 TAGACACTCTGCAGCTA-CC-C-G---AG---GACGCAGTTACACTAGCTCCTCCAAAGA 717 Query 733 GTGAGAAGAAAACTAGGCTTAAGCCTTCACCAAAGAAACAAAATCCGAAGATAAGAGATA 792 || ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 718 GTCCGAAGAAAACCAGGCTCAAGCCTTCACCAAAGAAACAAAATCCGAAGATAAGAGATA 777 Query 793 AGGAAAAGGACCTCTACGAAAGAAACCGTCTTCATGCATTTGAGAGCCTTATCTCTCTGA 852 ||||| | |||||||||||| |||||||||||||||| | |||||||||| ||||||||| Sbjct 778 AGGAATATGACCTCTACGAACGAAACCGTCTTCATGCGTGTGAGAGCCTTCTCTCTCTGA 837 Query 853 TGATAGGCAATGAACAACATAGAAAAACCACAATGCTATCTCTAAAGAAATCACGGGGAG 912 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 838 TGATAGGCAATGAACAACATAGAAAAACCACAATGCTATCTCTAAAGAAATCACGTGGAG 897 Query 913 AACTCTTAGAGCTTTTGACTCAGTGTTCAATTGGCTTTGCTGGAACTGGTATGGCTGTGC 972 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 898 AACTCTTCGAGCTTTTGACTCAGTGTTCAATTGGCTTTGCTGGCACTGGTATGGCTGTGC 957 Query 973 TCTTCTTTCTGGTTTGTGATGTTGCTTCCAGGCAGGTACCCTTTTGCGCAAACAAATTCT 1032 |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 958 TCTTCTTTCTCGTTTGTAATGTTGCTTCCAGGCAGGTACCCTTTTGCGCAAACCAATTCT 1017 Query 1033 TCGAAGGTGCACTGAGTTTGAGTTTGGTATTGCTCTCGTGGTCGGTGAGTAGACTCAGGG 1092 |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1018 TCGAGGGTGCAATGAGTTTGAGTTTGGTATTGCTCTCGTGGTCTGTGAGTAGACTCAGGG 1077 Query 1093 AAGCCCTTGTTAATTTTAATAGGAAAACAATCAACGAAGAAGAAATCTCAAATAAAGTGG 1152 |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1078 AAGCCCTTGTTAATTTCAATAGGAAAACAATCAACGAAGAAGAAGTCTCAAATAAAGTGG 1137 Query 1153 AAAGAAGAATCAAGGAAGTTTACTTCAGAGCTGCCACAGTAATTGCCTTGGTTGCACTTA 1212 ||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 1138 AAAGAAGAATCAAAGAAGTTTACTTCAGAGCTGCCACAGTTATTGCCATGGTTGCACTTA 1197 Query 1213 GGTTTGGTTGAATTGTTGAAATGCTGATGATTT 1245 ||||||||||||| |||| |||||||||||||| Sbjct 1198 GGTTTGGTTGAAT-GTTGGAATGCTGATGATTT 1229 Score = 658 bits (356), Expect = 0.0 Identities = 429/463 (93%), Gaps = 9/463 (2%) Strand=Plus/Plus Query 4 AAGAAGCCACG-TTTTTCTCAATGGCTTCTCATAGCTATTCAACACTTGGGTTTAGTCTC 62 |||||| || | |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 31 AAGAAGTCA-GTTTTTTCTCAATGGCTTCTCATAGCTATTCAACACTTAGGTTTAGTCTC 89 Query 63 CTTCAAGAGCTAGGAAGCAACGAAATCATCAAGA-AGAGCCGGGCTTATCTGGTGAATCC 121 |||||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||| Sbjct 90 CTTCAAGAGCTAAGAAGCAACGAGATCATCAAGACA-AGCCGGGCTTATCTGGTGAATCC 148 Query 122 TGGAGGAAGAAAACATGACATATTACCAGAAAGCTCCTTTAACCTGAAACCACAACTCTT 181 ||||||||||||| |||| |||||||| || |||||||||||||||||| |||||||||| Sbjct 149 TGGAGGAAGAAAATATGAGATATTACCGGAGAGCTCCTTTAACCTGAAATCACAACTCTT 208 Query 182 GGAGCCATTGAAACATTTTTCTTCTTCGAGTAAGTCTAACCACTTTGTGGAGTTTGATTC 241 |||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 209 GGAGCCATTGAAACCTTTTTCTTCTTTTAGTAAGTCTAACCACTTTTTGGAGTTTGATTC 268 Query 242 AACCATGATGAAGCATAGGCTCATGGATGTTCATGAAACTGGACCAGACCCTGTGTGTTT 301 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 269 AACCATGATGAAGCATAGACTCATGGATGTTCATGAAACTGGACCAGACCCTGTGTGTTT 328 Query 302 AAGCTTGGGGATCACTGAGCAGTATGCAA-ATAAACAGAAGGTGTTAGAGTTCCTTTTGT 360 |||||||||||||||| |||||||||||| | ||| || ||||||||||||||||||||| Sbjct 329 AAGCTTGGGGATCACTCAGCAGTATGCAAGA-AAAGAGGAGGTGTTAGAGTTCCTTTTGT 387 Query 361 CTAGATCAGAAGAA---CTCAAAGAAGGAGGATTCGATTTGTCTCTGCTATCTGAATTGA 417 |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| Sbjct 388 CTAGATCAGAAGAAGAACTCAAAGAAGAAGGATTCGATTTGTCTCTCCTATCTGAATTGA 447 Query 418 TGGGTCTGGAGGCTTTGGGATCAAGTTCTCAGCTACCATTTGC 460 ||||||| || ||||| ||||||||||||||| ||||| ||| Sbjct 448 TGGGTCTAGATGCTTTAAGATCAAGTTCTCAGCAACCATATGC 490 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61194464355 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5