BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919001
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1120 0.0
> AT1G03340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G02920.1);
Has 44 Blast hits to 41 proteins in 13 species: Archae - 0;
Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 43; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:819662-821317
FORWARD LENGTH=1298
Length=1298
Score = 1120 bits (606), Expect = 0.0
Identities = 706/753 (94%), Gaps = 12/753 (2%)
Strand=Plus/Plus
Query 494 TGCAAAGCCGCTT-TTGGATCTCATGGTGGATGGTAACATTCTGTTCTCAAGTAGCAGAG 552
|||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 488 TGCAAAGCCG-TTATTGGATCTCATGGTGGATGCTAACATTCTGTTCTCAAGTAGCAGAG 546
Query 553 CTGAATTTAATGATTTGGTCTCTACGGCAGCTGAGTTTCATAGGTTAAGGAACTCAACAA 612
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 547 CTGAATTGAATGATTTGGTCTCTACGGCAGCTGAGTTTCATAGATTAAGGAACTCAACAA 606
Query 613 GATGGAGAAAGCTCTCACGGCTTGTCCCGCAGTTTCAGCGATTCGACAGTGAAGCACTAA 672
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 607 GATGGAGAAAGCTCTCACGGCTTGTCCCGCAGTTTCAGCGATTCGACAGTGAAGTACCAA 666
Query 673 TAGACACTTTGCAGCTATCCGCGGTTAAGCCTGATGCAGTTACACTTGCTCCTCTTAAGA 732
|||||||| |||||||| || | | || || ||||||||||| ||||||| ||||
Sbjct 667 TAGACACTCTGCAGCTA-CC-C-G---AG---GACGCAGTTACACTAGCTCCTCCAAAGA 717
Query 733 GTGAGAAGAAAACTAGGCTTAAGCCTTCACCAAAGAAACAAAATCCGAAGATAAGAGATA 792
|| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GTCCGAAGAAAACCAGGCTCAAGCCTTCACCAAAGAAACAAAATCCGAAGATAAGAGATA 777
Query 793 AGGAAAAGGACCTCTACGAAAGAAACCGTCTTCATGCATTTGAGAGCCTTATCTCTCTGA 852
||||| | |||||||||||| |||||||||||||||| | |||||||||| |||||||||
Sbjct 778 AGGAATATGACCTCTACGAACGAAACCGTCTTCATGCGTGTGAGAGCCTTCTCTCTCTGA 837
Query 853 TGATAGGCAATGAACAACATAGAAAAACCACAATGCTATCTCTAAAGAAATCACGGGGAG 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 838 TGATAGGCAATGAACAACATAGAAAAACCACAATGCTATCTCTAAAGAAATCACGTGGAG 897
Query 913 AACTCTTAGAGCTTTTGACTCAGTGTTCAATTGGCTTTGCTGGAACTGGTATGGCTGTGC 972
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 898 AACTCTTCGAGCTTTTGACTCAGTGTTCAATTGGCTTTGCTGGCACTGGTATGGCTGTGC 957
Query 973 TCTTCTTTCTGGTTTGTGATGTTGCTTCCAGGCAGGTACCCTTTTGCGCAAACAAATTCT 1032
|||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 958 TCTTCTTTCTCGTTTGTAATGTTGCTTCCAGGCAGGTACCCTTTTGCGCAAACCAATTCT 1017
Query 1033 TCGAAGGTGCACTGAGTTTGAGTTTGGTATTGCTCTCGTGGTCGGTGAGTAGACTCAGGG 1092
|||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1018 TCGAGGGTGCAATGAGTTTGAGTTTGGTATTGCTCTCGTGGTCTGTGAGTAGACTCAGGG 1077
Query 1093 AAGCCCTTGTTAATTTTAATAGGAAAACAATCAACGAAGAAGAAATCTCAAATAAAGTGG 1152
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1078 AAGCCCTTGTTAATTTCAATAGGAAAACAATCAACGAAGAAGAAGTCTCAAATAAAGTGG 1137
Query 1153 AAAGAAGAATCAAGGAAGTTTACTTCAGAGCTGCCACAGTAATTGCCTTGGTTGCACTTA 1212
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1138 AAAGAAGAATCAAAGAAGTTTACTTCAGAGCTGCCACAGTTATTGCCATGGTTGCACTTA 1197
Query 1213 GGTTTGGTTGAATTGTTGAAATGCTGATGATTT 1245
||||||||||||| |||| ||||||||||||||
Sbjct 1198 GGTTTGGTTGAAT-GTTGGAATGCTGATGATTT 1229
Score = 658 bits (356), Expect = 0.0
Identities = 429/463 (93%), Gaps = 9/463 (2%)
Strand=Plus/Plus
Query 4 AAGAAGCCACG-TTTTTCTCAATGGCTTCTCATAGCTATTCAACACTTGGGTTTAGTCTC 62
|||||| || | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 31 AAGAAGTCA-GTTTTTTCTCAATGGCTTCTCATAGCTATTCAACACTTAGGTTTAGTCTC 89
Query 63 CTTCAAGAGCTAGGAAGCAACGAAATCATCAAGA-AGAGCCGGGCTTATCTGGTGAATCC 121
|||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||
Sbjct 90 CTTCAAGAGCTAAGAAGCAACGAGATCATCAAGACA-AGCCGGGCTTATCTGGTGAATCC 148
Query 122 TGGAGGAAGAAAACATGACATATTACCAGAAAGCTCCTTTAACCTGAAACCACAACTCTT 181
||||||||||||| |||| |||||||| || |||||||||||||||||| ||||||||||
Sbjct 149 TGGAGGAAGAAAATATGAGATATTACCGGAGAGCTCCTTTAACCTGAAATCACAACTCTT 208
Query 182 GGAGCCATTGAAACATTTTTCTTCTTCGAGTAAGTCTAACCACTTTGTGGAGTTTGATTC 241
|||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 209 GGAGCCATTGAAACCTTTTTCTTCTTTTAGTAAGTCTAACCACTTTTTGGAGTTTGATTC 268
Query 242 AACCATGATGAAGCATAGGCTCATGGATGTTCATGAAACTGGACCAGACCCTGTGTGTTT 301
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 269 AACCATGATGAAGCATAGACTCATGGATGTTCATGAAACTGGACCAGACCCTGTGTGTTT 328
Query 302 AAGCTTGGGGATCACTGAGCAGTATGCAA-ATAAACAGAAGGTGTTAGAGTTCCTTTTGT 360
|||||||||||||||| |||||||||||| | ||| || |||||||||||||||||||||
Sbjct 329 AAGCTTGGGGATCACTCAGCAGTATGCAAGA-AAAGAGGAGGTGTTAGAGTTCCTTTTGT 387
Query 361 CTAGATCAGAAGAA---CTCAAAGAAGGAGGATTCGATTTGTCTCTGCTATCTGAATTGA 417
|||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 388 CTAGATCAGAAGAAGAACTCAAAGAAGAAGGATTCGATTTGTCTCTCCTATCTGAATTGA 447
Query 418 TGGGTCTGGAGGCTTTGGGATCAAGTTCTCAGCTACCATTTGC 460
||||||| || ||||| ||||||||||||||| ||||| |||
Sbjct 448 TGGGTCTAGATGCTTTAAGATCAAGTTCTCAGCAACCATATGC 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5