BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919007
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03390.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2152 0.0
> AT1G03390.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr1:841033-842418 REVERSE LENGTH=1386
Length=1386
Score = 2152 bits (1165), Expect = 0.0
Identities = 1317/1391 (95%), Gaps = 7/1391 (1%)
Strand=Plus/Plus
Query 21 ATGGATTCTTGTATCCAAGAACTTCATTTCTCCCACCTCCATATCCCAGTCACGATCAAC 80
|||| |||||| |||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1 ATGGCTTCTTGCATCCAAGAACTTCATTTCACTCACCTCCATATCCCAGTCACCATCAAC 60
Query 81 CAGAAATTTCTTGTACATCCATCCAGTCCAACACCTGCAAATCATCAATCTCCTCACCAT 140
||| ||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 61 CAGCAATTTCTTGTACATCCATCAAGTCCAACACCTGC-AA--ATCAATCTCCTCACCAT 117
Query 141 AGTCTCTATCTATCAAACCTAGATGATATAATCGGAGCACGAGTTTTCACTCCCTCCGTT 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AGTCTCTATCTATCAAACCTAGATGATATAATCGGAGCACGAGTTTTCACTCCCTCCGTT 177
Query 201 TATTTCTATCCGTCAACCAATACTCAAGAATCTTTGGTACTGAAACGACTTCAAGATGCT 260
||||||||||| |||||||||| || ||||||||| ||||||||||| ||||||||||||
Sbjct 178 TATTTCTATCCATCAACCAATAATCGAGAATCTTTTGTACTGAAACGGCTTCAAGATGCT 237
Query 261 CTTGGTGAGGTTTTAGTTCCGTATTATCCACTCTCTGGTAGGTTAAGAGAAGTGGAAAAT 320
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTTAGTGAGGTTTTAGTTCCGTATTATCCACTCTCTGGTAGGTTAAGAGAAGTGGAAAAT 297
Query 321 GGGAAACTGGAAGTTTTCTTTGGAGAAGAGCAAGGTGCGTTAATGGTGTCTGCGAATTCT 380
||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 298 GGGAAACTGGAAGTTTTCTTTGGAGAAGAGCAAGGTGTGTTAATGGTGTCGGCAAATTCA 357
Query 381 TCAATGGCTTTATCTGATCTTGGAGATCTTACAGTGCCAAATCCAGCCTGGTTACCACTA 440
||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 358 TCAATGGATTTAGCTGATCTTGGAGATCTTACAGTTCCAAATCCAGCTTGGTTACCATTA 417
Query 441 ATCTTTCGAAACCCAGGAGAAGAAGCTTACAAAATCCTTGAAATGCCGTTACTTATAGCT 500
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 418 ATCTTTCGAAACCCAGGAGAAGAAGCTTACAAGATCCTCGAAATGCCGTTACTTATAGCT 477
Query 501 CAAGTAACGTTTTTCACCTGTGGTGGGTTTAGCCTTGGCATTAGACTCTGCCATTGCATC 560
|||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||
Sbjct 478 CAAGTAACGTTTTTCACCTGTGGTGGATTTAGCCTCGGGATTAGACTTTGCCATTGCATT 537
Query 561 TGCGATGGTTTTGGAGCCATGCAGTTTCTTGGCTCATGGGCAGCTACAGCAAAAACCGGA 620
|| |||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 538 TGTGATGGTTTTGGAGCTATGCAGTTTCTCGGCTCGTGGGCAGCTACAGCGAAAACCGGA 597
Query 621 AAATTGATTACAGATCCTGAGCCGGTTTGGGATAGAGAGACTCTCAAACCAAGAAACCCT 680
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 598 AAATTGATTGCAGATCCTGAGCCGGTTTGGGATAGAGAGACTTTCAAACCAAGAAACCCT 657
Query 681 CCAATGGTGAAATACCCACATCATGAATATCTTCCAATTGAAGAAAGATCGAATTTGACG 740
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 658 CCAATGGTGAAATACCCACATCATGAGTATCTTCCAATTGAAGAAAGATCGAATTTGACG 717
Query 741 AACTCCTTGTGGGATACGAAGCCATTGCAGAAATGTTACAGGATAAGCAAAGAGTTTCAG 800
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AACTCCTTGTGGGATACAAAGCCATTGCAGAAATGTTACAGGATAAGCAAAGAGTTTCAG 777
Query 801 TGTCGGGTCAAAGGCATTGCTCAAGGACAAGACTC-AACCTTAGTTTGCAGCACGTTTGA 859
||||| || ||| |||||||||||||| |||| || |||||||||||| |||||||||||
Sbjct 778 TGTCGTGTTAAAAGCATTGCTCAAGGAGAAGA-TCCAACCTTAGTTTGTAGCACGTTTGA 836
Query 860 TGCAATGGCTGCACATATATGGAGATCATGGGTCAAAGCCCTTGACGTGAAGCCACTGGA 919
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 837 TGCAATGGCTGCACACATATGGAGATCATGGGTCAAAGCACTTGATGTGAAGCCACTGGA 896
Query 920 TTACAATCTCAGGCTCACGTTTTCAGTCAACGTAAGAACAAGACTCGAAACCGTAAAGTT 979
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 897 TTACAATCTCAGGCTCACGTTTTCAGTCAACGTAAGAACAAGACTAGAAACCCTAAAGTT 956
Query 980 AAGAAAAGGGTTTTACGGGAATGTGGTGTGTTTGGCCTGTGCAATGAGCAGTGTCAACG- 1038
||||||||| |||||||| ||||||||||||||||| || ||||||||||||||| | |
Sbjct 957 AAGAAAAGGTTTTTACGGCAATGTGGTGTGTTTGGCTTGCGCAATGAGCAGTGTCGA-GA 1015
Query 1039 GTCTTATTAACGATTCTATTTCTAAGACAACTCGTTTGGTCCAGGAGGCGAGACTTAGGG 1098
||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1016 GTCTTATTAACGATTCTCTTTCTAAGACAACACGTTTGGTTCAGGATGCGAGACTTAGGG 1075
Query 1099 TTTCAGAGGATTACTTGCGGTCTATGGTGGATTACGTTGAGGTAAAGAGGCCAAAGAGGT 1158
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1076 TTTCAGAGGATTACTTGCGTTCTATGGTGGATTACGTTGATGTAAAGAGGCCAAAGAGGT 1135
Query 1159 TAGAGTTTGGTGGGAAGCTAACGATAACACAATGGACCCGGTTTGAAATGTATGAGACTG 1218
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1136 TAGAGTTTGGTGGGAAGCTAACGATAACGCAATGGACCCGGTTTGAAATGTATGAGACTG 1195
Query 1219 CAGATTTTGGATGGGGTAAACCGGTTTATGCAGGGCCAATTGACTTGAGGCCTACGCCAC 1278
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CGGATTTTGGATGGGGTAAACCGGTTTATGCAGGGCCAATTGACTTGAGGCCTACGCCAC 1255
Query 1279 AGGTTTGCGTGTTGTTGCCTCAAGGAGGAGTTGAGTCTGGCAATGACCAAAGCATGGTGG 1338
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AGGTTTGCGTGTTGTTGCCACAAGGAGGAGTTGAGTCTGGCAATGACCAAAGCATGGTGG 1315
Query 1339 TTTGCCTTTGCTTGCCTCCTTCTGCTGTTCATAATTTTACTCGGCTTCTGTCTTTAACTG 1398
|||||||||||||||||||| |||||||||||| |||||||||||||| ||||||| ||
Sbjct 1316 TTTGCCTTTGCTTGCCTCCTACTGCTGTTCATACCTTTACTCGGCTTCTATCTTTAAATG 1375
Query 1399 ATCATAAATAA 1409
|||||||||||
Sbjct 1376 ATCATAAATAA 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5