BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919008

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G03430.1 | Symbols: AHP5 | histidine-containing phosphotrans...   787    0.0  


> AT1G03430.1 | Symbols: AHP5 | histidine-containing phosphotransfer 
factor 5 | chr1:847873-849500 FORWARD LENGTH=1025
Length=1025

 Score =  787 bits (426),  Expect = 0.0
 Identities = 488/518 (94%), Gaps = 4/518 (1%)
 Strand=Plus/Plus

Query  1    GGTTCTTGGTCAAC-TTAGCCATGAACACCACCGTCGTTGCTCAGTTGCAGAGACAATTT  59
            |||||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct  266  GGTTCTTGGTAAACTTTAGCTATGAACACCATCGTCGTTGCTCAGTTGCAGAGACAATTT  325

Query  60   CAAGACTACATCGTTTCTCTTTATCAACAGGGATTTCTGGATAATCAGTTCTCTGAGTTG  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  326  CAAGACTACATCGTTTCTCTTTATCAACAGGGATTTCTGGATAATCAGTTCTCAGAGTTG  385

Query  120  AGAAAGTTGCAAGATGAAGGCACTCCTGATTTTGTATCTGAAGTTGTCTCTCTCTTCTTT  179
            |||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||| 
Sbjct  386  AGAAAGTTGCAAGATGAAGGAACCCCTGATTTTGTAGCTGAAGTTGTCTCTCTATTCTTC  445

Query  180  GACGACTGTTCCAAGCTTATTGATACCATGTCTGCATCCCTGGAGCGGCCAGATAATGTG  239
            ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||
Sbjct  446  GACGACTGTTCCAAGCTTATTAATACCATGTCTATATCCCTGGAGCGGCCAGATAATGTG  505

Query  240  GATTTCAAACAGGTAGATTCAGGTGTGCATCAACTCAAGGGTAGTAGCTCAAGTGTTGGT  299
            |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct  506  GATTTCAAACAGGTGGATTCAGGTGTTCATCAACTCAAGGGTAGTAGCTCCAGTGTCGGT  565

Query  300  GCACAG-AGGGTGAAAAATGTGTGTATATCTTTCAAGGAATGTTGCCATGTTCAGAACCG  358
            ||| || ||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct  566  GCA-AGGAGGGTGAAAAATGTGTGCATATCTTTCAAGGAATGTTGCGATGTTCAGAACCG  624

Query  359  TGAAGGGTGTTTAAGGTGTTTGCAGCAGGTGGATTATGAATATAAGATGTTAAAGACCAA  418
            |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  625  TGAAGGGTGTCTAAGGTGTTTACAGCAGGTGGATTATGAATATAAGATGTTAAAGACTAA  684

Query  419  ACTTCAGGATCTGTTTAATTTAGAGCAACAGATCCTCCTAGCTGGTGGTACAATTCCTCA  478
            |||||||||||| |||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct  685  ACTTCAGGATCTCTTTAATTTAGAGAAACAGATCCTCCAAGCTGGAGGTACAATTCCTCA  744

Query  479  AGTGGATATAAATTAGACTGATGCGTTTCTCGAATTAT  516
            |||||||||||||||||| |||||||||||||| ||||
Sbjct  745  AGTGGATATAAATTAGACCGATGCGTTTCTCGA-TTAT  781



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5