BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919013
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03475.1 | Symbols: LIN2, HEMF1, ATCPO-I | Coproporphyrinoge... 1980 0.0
AT4G03205.2 | Symbols: hemf2 | Coproporphyrinogen III oxidase |... 586 2e-166
> AT1G03475.1 | Symbols: LIN2, HEMF1, ATCPO-I | Coproporphyrinogen
III oxidase | chr1:869051-871211 REVERSE LENGTH=1448
Length=1448
Score = 1980 bits (1072), Expect = 0.0
Identities = 1161/1204 (96%), Gaps = 6/1204 (0%)
Strand=Plus/Plus
Query 1 AAATCC-AATTCGGATCAAACATGGcttctcactcgtcgactctcctctcttctcctact 59
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 AAATCCAAATTCGGATCAAACATGGCTTCTCACTCGTCGACTCTCCTCTCTTCTCCTACT 75
Query 60 ttcgctcccttctcctctcatcgtcttcattattctcccaatctctctACTCTCAGATTC 119
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 76 TTCGCTCCTTTCTCCTCTCATCGTCTTCATTATTCTCCCAATCCCTCTACTCTCAGATTC 135
Query 120 TCCCGTCCAATCAGAAATAAACCCAATCTCGCCTTGCGATGTTCAGTCTCAATCGAGAAA 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 136 TCCCGTCCAATCAGAAATAAACCTAATCTCGCCTTGCGATGTTCAGTCTCAATTGAGAAA 195
Query 180 GAAGTTCCCGAAACTGAACGACCCTTTACCTTT-CTCAGGGATTCTGATGACGCCACTCA 238
|||||||||||||||||||||||||||| |||| || |||||||||||||||| ||||
Sbjct 196 GAAGTTCCCGAAACTGAACGACCCTTTA-CTTTCCTTAGGGATTCTGATGACGTCACT-- 252
Query 239 CTCTTCTTCTTCTACTTCTTCCGTCAGGGCTCGTTTCGAGACTATGATTAGGGCAGCTCA 298
| | ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 253 C-CATCTTCTTCTTCTTCTTCCGTCAGGGCTCGTTTCGAGACTATGATTAGGGCTGCTCA 311
Query 299 AGACAGTGTCTGTGATGCAATTGAAGCTATCGAAGGCGGTCCTAAGTTTAAAGAAGATGT 358
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 312 AGACAGTGTTTGTGATGCAATTGAAGCTATAGAAGGCGGTCCTAAGTTTAAAGAAGATGT 371
Query 359 TTGGTCTCGACCTGGTGGTGGAGGTGGAATCAGTCGTGTTTTGCAGGATGGTAATGTCTT 418
||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 372 TTGGTCTCGACCTGGTGGTGGCGGTGGAATCAGTCGTGTGTTGCAGGACGGGAATGTCTT 431
Query 419 TGAGAAAGCTGGTGTTAATGTCTCTGTGGTTTACGGTGTTATGCCTCCTGAAGCTTATAG 478
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 432 TGAGAAAGCTGGTGTTAATGTCTCTGTGGTTTATGGTGTTATGCCTCCTGAAGCTTATAG 491
Query 479 AGCTGCAAAAGGCTCAGCTTCAGATCAGAAACCTGGTCCGGTTCCGTTCTTCGCTGCCGG 538
||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 492 AGCTGCAAAGGGCTCAGCTTCTGATCAGAAACCTGGTCCTGTTCCGTTCTTCGCTGCTGG 551
Query 539 AGTTAGCTCGGTTTTGCATCCCAAGAACCCTTTTGCCCCAACTCTGCATTTCAATTATCG 598
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 552 AGTCAGCTCGGTTTTGCATCCCAAGAACCCTTTTGCCCCAACCCTGCATTTCAATTATCG 611
Query 599 TTATTTCGAGACGGATGCTCCAAAGGATGTTCCTGGAGCTCCGAGGCAATGGTGGTTTGG 658
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 612 CTATTTCGAGACAGATGCTCCAAAGGATGTTCCTGGAGCTCCAAGGCAATGGTGGTTTGG 671
Query 659 TGGTGGCACTGATTTCACTCCTGCTTACATCTTTGAAGAAGATGTCAAGCATTTCCATTC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 TGGTGGCACTGATTTCACTCCTGCTTACATCTTTGAAGAAGATGTCAAGCATTTCCATTC 731
Query 719 GATTCAAAAGCAAGCCTGTGACAAATTCGACCCTTCCTTCTATCCCCGATTCAAGAAGTG 778
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 732 GATTCAAAAGCAAGCCTGTGACAAATTTGACCCTTCCTTCTATCCCCGATTCAAGAAGTG 791
Query 779 GTGTGATGACTACTTTTACATCAAGCACCGTGATGAGAGACGAGGACTAGGAGGGATATT 838
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 792 GTGTGATGACTACTTTTACATCAAGCACCGTGATGAGAGACGAGGACTTGGAGGGATATT 851
Query 839 TTTTGATGATCTTAATGACTATGATCAGGAAATGCTTTTGTCATTTGCCACTGAATGTGC 898
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 852 TTTTGATGATCTTAATGACTATGATCAGGAAATGCTTCTGTCATTTGCCACTGAATGCGC 911
Query 899 AAACTCAGTGGTACCGGCTTATATACCTATAGTAGAGAAAAGGAAAGACATGGAATTTAC 958
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 AAACTCAGTGGTGCCGGCTTATATACCTATAGTAGAGAAAAGGAAAGACATGGAATTTAC 971
Query 959 AGAGCAGCACAAGGCATGGCAACAGTTGCGAAGAGGGCGATATGTCGAATTCAACTTGGT 1018
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 972 AGAGCAGCACAAGGCATGGCAACAGTTGCGACGAGGGCGATATGTCGAATTCAACTTGGT 1031
Query 1019 ATATGATCGTGGAACGACATTTGGTCTGAAGACAGGAGGACGAATAGAGAGCATTCTCGT 1078
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 ATATGATCGGGGAACGACATTTGGTCTGAAGACAGGAGGACGAATAGAGAGCATTCTCGT 1091
Query 1079 CTCTCTTCCGCTTTCAGCAAGATGGGAATATGACCATAAACCGGAAGAGGGAACTGAAGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1092 CTCTCTTCCGCTTTCAGCAAGATGGGAATATGACCATAAACCGGAAGAGGGGACCGAAGA 1151
Query 1139 GTGGAAGCTATTGGATGCTTGTATCAACCCAAAGGAGTGGATCTAGCCTGTGTTTCCGAT 1198
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 1152 GTGGAAGCTATTGGATGCTTGCATCAACCCGAAGGAGTGGATCTAGCCTGTGTTTCCCAT 1211
Query 1199 TGTT 1202
||||
Sbjct 1212 TGTT 1215
> AT4G03205.2 | Symbols: hemf2 | Coproporphyrinogen III oxidase
| chr4:1412785-1414782 FORWARD LENGTH=1738
Length=1738
Score = 586 bits (317), Expect = 2e-166
Identities = 594/722 (82%), Gaps = 42/722 (6%)
Strand=Plus/Plus
Query 17 AAACATGGcttctcactcgtcgactctcctctcttctcctac-t--ttcgctcccttctc 73
||| ||||| |||||||| ||||||||| || |||||||| | | ||| || ||||||
Sbjct 27 AAA-ATGGCGTCTCACTCTTCGACTCTCTTCACTTCTCCTTCTTCCTTCATTCTCTTCTC 85
Query 74 ctctcatcgtcttc-attattctcccaa-t-ctctctAC-T-CTCAGATTCTCCCGTCCA 128
|||||||||| || | | |||||| || | || || || | | || || | || | |
Sbjct 86 TTCTCATCGTC-TCAAATCTTCTCCGAATTACT-TC-ACTTAC-CA-CTT-T-CC-T-CG 136
Query 129 ATCAG-AAATAAACCCA-ATCTCGCCTTGCGATGTTCAGTCTCAATCGAGAAAGAAGTTC 186
|| | ||| | | ||| || ||| ||||||||| |||||||||||||||||||||||||
Sbjct 137 TTCCGTAAAGAGA-CCACATTTCGACTTGCGATGCTCAGTCTCAATCGAGAAAGAAGTTC 195
Query 187 CCGAAACTGAACGACCCTTTAC-CTTT-CTCAGGGATTCTGATGAC-GCCACTCACTCTT 243
| ||||| ||| || ||||| | |||| |||| || ||| ||| || | ||| | |
Sbjct 196 CGGAAACAGAAAGA-CCTTT-CACTTTCCTCA--GAGTCT-CCGACGGCGA-TCAAAC-T 248
Query 244 C-TTCTTCTACTTCTTCCGTCAGGGCTCGTTTCGAGACTATGATTAGGGCAGCTCAAGAC 302
| |||||| ||| ||| || |||||||||||||||| ||||| || | ||||||||
Sbjct 249 CAATCTTCTTCTTATTCGGTTAGGGCTCGTTTCGAGAAAATGATAAGAACTGCTCAAGAT 308
Query 303 AGTGTCTGTGATGCAATTGAAGCTA-TCGAAGGCGGTCCTAAGTTTAAAGAAGATGTTTG 361
| |||||||| || |||||||| | |||||| |||||||| || || |||||||||||
Sbjct 309 AAAGTCTGTGAAGCCATTGAAGC-AGTCGAAGAAGGTCCTAAATTCAAGGAAGATGTTTG 367
Query 362 GTCTCGACCTGGTGGTGGAGGTGGAATCAGTCGTGTTTTGCAGGATGGTAATGTCTTTGA 421
||||||||| ||||| || ||||||||||||||| ||||||| || || ||||| | ||
Sbjct 368 GTCTCGACCCGGTGGAGGTGGTGGAATCAGTCGTATTTTGCAAGACGGAAATGTATGGGA 427
Query 422 GAAAGCTGGTGTTAATGTCTCTGTGGTTTACGGTGTTATGCCTCCTGAAGCTTATAGAGC 481
||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 428 GAAAGCTGGAGTTAATGTCTCTGTGATTTATGGTGTTATGCCTCCTGAAGCTTATAGAGC 487
Query 482 TGCAAAAGGCT--CAGCTTCAGATCAGAAACCTGGTCCGGTTCCGTTCTTCGCTGCCGGA 539
||| ||| ||| || | || || || |||||||||||| |||||||||| || || |||
Sbjct 488 TGCTAAA-GCTGCCA-CGTCTGAGCAAAAACCTGGTCCGATTCCGTTCTTTGCCGCTGGA 545
Query 540 GTTAGCTCGGTTTTGCATCC-CAAGAACCCTTTTGCCCCAACTCTGCATTTCAATTATCG 598
||||||||||||||||| | ||||||||||||| || ||||||||||||||||| ||
Sbjct 546 ACCAGCTCGGTTTTGCATCCTC-AGAACCCTTTTGCTCCGACTCTGCATTTCAATTACCG 604
Query 599 TTATTTCGAGACGGATGCTCCAAAGGATGTTCCTGGAGCTCCGAGGCAATGGTGGTTTGG 658
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 605 CTATTTCGAGACCGATGCTCCAAAGGATGTTCCTGGAGCTCCGAGGCAATGGTGGTTCGG 664
Query 659 TGGTGGCACTGATTTCACTCCTGCTTACATCTTTGAAGAAGATGTCAAGCA-TTTCCATT 717
|||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||| |||
Sbjct 665 TGGTGGGACTGACTTCACACCTGCTTACATCTTTGAAGAAGACGTCAAGCACTTTC-ATT 723
Query 718 CG 719
||
Sbjct 724 CG 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5