BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919017
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03510.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1995 0.0
> AT1G03510.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:876258-877547 REVERSE LENGTH=1290
Length=1290
Score = 1995 bits (1080), Expect = 0.0
Identities = 1224/1294 (95%), Gaps = 8/1294 (1%)
Strand=Plus/Plus
Query 21 ATGTCTTCCTCGTACGCATTGAACTGCACTAAATTGATCTCTCTCACCAAACAATTAAGC 80
|||||||| |||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCTTCGTACGCGTCGAGCTGCACTAAATTGATCTCTCTCACCAAACAATTAAGC 60
Query 81 TCTTACGCGAACCAAGGATTCCATGAACAAGCTCTCACTCTCTTTCGTCAAATGCATTCT 140
|||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||
Sbjct 61 TCTTACGCGAACCAAGGAAACCATGAACAAGCTCTTAATCTCTTTCTTCAAATGCATTCT 120
Query 141 TCTTTCGCATTACCTCTCGACGCACACGTCTTCTCACTCGCTCTCAAATCGTGCGCTGCA 200
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTTTCGCCTTACCTCTCGATGCACACGTCTTCTCACTCGCTCTCAAATCGTGCGCTGCA 180
Query 201 GCTTTCCATCCTGTTCTCGGCGGATCAGTCCATGCCCACTCCGTCAAATCCAATTTTCTG 260
||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GCTTTCCGTCCTGTTCTCGGTGGATCAGTCCATGCACACTCCGTCAAATCCAATTTTCTG 240
Query 261 TCGAACCCATTTGTGGGATGCGC-TCTACTCGATATGTATGGTAAATGCTTGTCTGTTAC 319
|||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 241 TCGAACCCATTTGTTGGATGCGCGT-TACTCGATATGTATGGTAAATGCTTGTCTGTTTC 299
Query 320 TCATGCTCGCAAACTGTTCGACGAAATTCCTCAGAGGAATGCTGTTGTGTGGAACGCGAT 379
||||||||| |||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 300 TCATGCTCGTAAACTGTTCGACGAAATTCCTCAGAGGAATGCGGTAGTATGGAACGCGAT 359
Query 380 GATTTCGCATTACACACATTGTGGGAAGATTCAA-GAAGCGGTTGAGTTGTATGAAGCTA 438
|||||||||||||||||||||||||||| || || ||||| || ||||||||||||||||
Sbjct 360 GATTTCGCATTACACACATTGTGGGAAGGTT-AAGGAAGCAGTGGAGTTGTATGAAGCTA 418
Query 439 TGGATGTTATGCCAAATGAGTCTTCTTTCAATGCTATCATAAAGGGTTTTGTTGGTACTG 498
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 419 TGGATGTTATGCCAAATGAGTCTTCTTTCAATGCTATCATAAAGGGTTTAGTTGGTACAG 478
Query 499 AAGATGGGTCTTATAAAGCTATTGAATTCTATAGGAAGATGATAGATTTTAGATTCAAGC 558
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 AAGATGGGTCTTATAGAGCTATTGAATTCTATAGGAAGATGATAGAGTTTAGATTCAAGC 538
Query 559 CTAATTTGATTACGCTTCTTGCGTTAGTTTCCGCTTGCTCAGCCATTGGGGCTTTTCGTT 618
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 539 CTAATTTGATTACCCTTCTTGCGTTAGTATCTGCTTGCTCAGCCATTGGGGCTTTTCGTT 598
Query 619 TAATAAAAGAGATTCATTCATATGCTTTTAGGAATCTGATTGAGCCGCATCCACAATTGA 678
||||||||||||| ||||||||||||||||||||||| ||||||||||| || || ||||
Sbjct 599 TAATAAAAGAGATCCATTCATATGCTTTTAGGAATCTAATTGAGCCGCACCCTCAGTTGA 658
Query 679 AAAGCGGGTTAGTGGAGGCGTATGGGCGGTGTGGATGCATTGTCTATGTGCAATTGGTGT 738
||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 659 AAAGCGGGTTAGTAGAGGCGTATGGGAGGTGTGGAAGCATTGTCTATGTGCAATTGGTGT 718
Query 739 TTGATAGCAT-GACTGATAGGGATGTGGTTGCTTGGAGTAGCTTGATATCTGCTTATGCA 797
|||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 719 TTGATAGCATGGA-AGATAGGGATGTGGTTGCTTGGAGTAGCTTGATATCCGCTTATGCA 777
Query 798 CTTCACGGTGACGCGGAATCCGCTCTCAGAACATTTCAAGAAATGGAATCGGCGAAAGTA 857
|||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||
Sbjct 778 CTTCACGGTGACGCGGAATCTGCTCTAAAAACATTTCAAGAAATGGAATTGGCGAAAGTA 837
Query 858 ACACCCGATGACATAGCGTTTCTGAACGTGCTAAAGGCTTGTAGTCACGCTGGTTTAGCC 917
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ACACCGGATGACATAGCGTTTCTGAACGTGCTAAAGGCTTGTAGTCACGCTGGTTTAGCT 897
Query 918 GATGAGGCTCTTTTATACTTTAAGAGAATGCAGGGAGATTACGGTTTGCGTGCAAGCAGG 977
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 898 GATGAGGCTCTTGTATACTTTAAGAGAATGCAGGGAGATTACGGTTTGCGTGCAAGCAAG 957
Query 978 GACCATTACTCGTGTTTGGTGGATGTCTTAAGCAGAGTAGGGAGGTTTGAAGAAGCTTAC 1037
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 958 GATCATTACTCGTGTTTGGTGGATGTCTTAAGCAGAGTAGGGAGATTTGAAGAAGCTTAT 1017
Query 1038 AAAGTGATTCAAGCTATGCCTGAGAAGCCAACGGCTAAGACATGGGGGGCTTTGCTTGGA 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAAGTGATTCAAGCTATGCCTGAGAAGCCAACGGCTAAGACATGGGGGGCTTTGCTTGGA 1077
Query 1098 GCTTGTAGGAACTACGGCGAGGTTGAGCTAGCAGAGATTGCTGCGAAG-GAATTGTGGAA 1156
||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||| ||
Sbjct 1078 GCTTGTAGGAACTACGGTGAGATTGAGCTAGCAGAGATTGCTGC-AAGAGAATTGTTGAT 1136
Query 1157 GATAGAGCCAGAGAATCCCGCGAATTATGTGTTGTTGGGGAAGATTTATATGAGTGTTGG 1216
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1137 GGTAGAGCCAGAGAATCCCGCGAATTATGTGTTGTTGGGGAAGATATATATGAGTGTTGG 1196
Query 1217 AAGACAAGAAGAGGCAGAGAGACTTCGAATGGAGATGAAGGAGAGTGGAGTGAAGGTTTC 1276
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 1197 AAGACAAGAAGAGGCAGAGAGACTTAGATTGAAGATGAAGGAGAGTGGAGTGAAGGTTTC 1256
Query 1277 ACCTGGAAGTAGTTGGTGTTTGTTCAAAGATTGA 1310
||| || |||||||||||||||||||||||||||
Sbjct 1257 ACCAGGTAGTAGTTGGTGTTTGTTCAAAGATTGA 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65461510680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5