BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919018
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03520.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2174 0.0
AT4G03340.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1062 0.0
> AT1G03520.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:877862-880158
REVERSE LENGTH=2035
Length=2035
Score = 2174 bits (1177), Expect = 0.0
Identities = 1317/1386 (95%), Gaps = 4/1386 (0%)
Strand=Plus/Plus
Query 1 ATAGGATAAGTGGTTAGGGAATGAGAAAATTGTATAGGAAGCTGGTTTCATTCAGAGACC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 ATAGGATAAGTGGTTAGGGAATGAGAAAATTGTATAGGAAGCTGGTTTCATTCAGAGACC 645
Query 61 CTTTTGCTAGGGTGAAGAGACATGTTAGTTCACACTCAGGGATTAGAGCTTTCAGCGACA 120
| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 646 CATTTGCTAGGGTCAAGAGACATGTTAGTTCACATTCAGGGTTTAGAGCTTTCAGCGACA 705
Query 121 GAAAATGGATGTTCCCTTTTCTAGCAAGCTTGATCATGTCGATTACTCTCCTGATTTTGT 180
|||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 706 GAAAATGGTTGTTCCCTTTTCTAGCTAGCTTGATCATGTCCATTACTCTTCTGATTTTGT 765
Query 181 TAATCTCTGGCCAATTCGACGGCTTCTATGGGGAAGAAGATCAATTACCA-TTAGATGTT 239
|||| ||||||||||||||| ||||| |||||||||||||||||||||| || ||||||
Sbjct 766 TAATTTCTGGCCAATTCGACAACTTCTTTGGGGAAGAAGATCAATTACCAGTT-GATGTT 824
Query 240 GTTTCAGAGTCTAATGAGTACTTTGTAGAATCAGATTTCAAACAATCTTTGAATTCGACG 299
||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 825 GTTTCAGAGTCTAATGACTACTTTGTAGAATCAGATTTCAAGCAATCTATGAATTCGACG 884
Query 300 GCTGATGTTAATTTAGGGCCTCCTAGGTTAGCTTATTTGATATCGGGAACAAAAGGCGAT 359
|||||||||||| || ||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 885 GCTGATGTTAATCCAGAGCCTCCTAGATTAGCTTATTTAATATCGGGAACAAAAGGCGAT 944
Query 360 AGTCATAGGATGATGAGGACTTTACAAGCTGTGTACCATCCTAGAAACCAATATGTTCTG 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 945 AGTCATAGGATGATGAGGACTTTACAAGCTGTGTACCATCCTAGAAACCAGTATGTTCTG 1004
Query 420 CATTTGGATCTTGAGGCTCCACCTCGTGAACGGATGGAGCTGGCGATGTCCGTGAAGAGT 479
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 1005 CATTTGGATCTTGAGGCTCCACCTCGAGAACGGATGGAGCTGGCCATGTCCGTGAAGACT 1064
Query 480 GATCCGACTTTCCGTGAAATGGAGAATGTTCGTGTGATGTCTCAGTCTAATCTTGTTACT 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1065 GATCCGACTTTCCGTGAAATGGAGAATGTTCGTGTGATGGCTCAGTCTAATCTTGTTACT 1124
Query 540 TATAAAGGCCCTACAATGATTGCGTGTACTCTTCAAGCCGTTGCAATTTTGCTGAGGGAA 599
||||||||||||||||||||||| |||||||||||||||||| |||| ||||| || |||
Sbjct 1125 TATAAAGGCCCTACAATGATTGCTTGTACTCTTCAAGCCGTTTCAATCTTGCTAAGAGAA 1184
Query 600 AGCTTACATTGGGATTGGTTTCTTAACCTTAGCGCCTCGGATTATCCTCTAGTAACACAA 659
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1185 AGCTTACATTGGGATTGGTTTCTTAACCTTAGTGCCTCGGATTATCCTCTAGTAACACAA 1244
Query 660 GATGATTTGTTGTATGTCTTCTCAAATCTGTCTCGGAATGTCAATTTCATCGAGAATATG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 GATGATTTGTTGTATGTCTTCTCAAATCTGTCTCGGAATGTCAATTTCATCGAGAATATG 1304
Query 720 CAGCTCACCGGATGGAAACTGAATCAGAGGGCTAAATCAATCATTGTTGATCCTGCCCTA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 CAGCTCACCGGATGGAAACTGAATCAGAGGGCTAAATCAATCATTGTTGATCCTGCCCTA 1364
Query 780 TACCTATCGAAGAAATCCGATATTGCTTGGACTACTCAACGACGATCACTTCCAAATTCT 839
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1365 TACCTATCGAAGAAATCCGATATCGCTTGGACTACTCAACGGCGATCACTTCCAAATTCT 1424
Query 840 TTCAAGCTATTCACCGGCTCAGCTTGGATAATGTTGACTCGGTCTTTCCTCGAGTACTGC 899
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TTCAGGCTATTCACTGGCTCAGCTTGGATAATGTTGACTCGGTCTTTCCTCGAGTACTGC 1484
Query 900 ATTTGGGGATGGGATAACTTCCCAAGAACAATACTAATGTACTACACGAATTTCGTGTCC 959
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1485 ATTTGGGGATGGGATAATTTCCCAAGAACAATACTAATGTACTACACAAATTTCGTATCT 1544
Query 960 TCTCCTGAAGGATACTTCCATACAGTAATCTGCAACAGCAAAGAGTTTGTCAACACCGCG 1019
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 1545 TCTCCTGAAGGATACTTCCACACAGTAATCTGCAACAGCAAAGAGTTTATCAACACTGCA 1604
Query 1020 ATTGGGCATGATCTACACTACATTGCTTGGGACAGTCCTCCAAAGCAACACCCTAGATCT 1079
|| || || || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 ATCGGTCACGACCTTCACTACATTGCTTGGGACAGTCCTCCAAAGCAACACCCTAGATCT 1664
Query 1080 CTCTCATTGAAGGATTTCGACAATATGGTCAAAAGCAAAGCTCCATTTGCACGCAAGTTC 1139
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1665 CTCTCGTTGAAGGATTTTGACAATATGGTCAAGAGCAAAGCTCCATTTGCACGCAAGTTC 1724
Query 1140 CACAAGAACGATCCTGCGTTAGACAAGATCGATAAAGAGCTATTGGGACGGACACACAGA 1199
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1725 CACAAAAACGATCCTGCGTTAGACAAGATCGATAAAGAGCTATTGGGACGGACACACCGG 1784
Query 1200 TTTTCTCCAGGAGGATGGTGTATTGGGAGTTCAGCTAATGGCAATGATCCGTGCTCTGTG 1259
||| | ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 1785 TTTGCACCAGGAGGATGGTGTGTCGGGAGTTCAGCTAATGGCAATGATCAGTGCTCTGTG 1844
Query 1260 CAAGGCGACGACTCGGTGTTGAAACCTGGACCTGGTTCTGCA-AGGTTGCAGGAGCTTGT 1318
||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 1845 CAAGGTGACGACTCGGTGTTGAAACCAGGACCTGGTTCTG-AGAGGTTGCAGGAGCTTGT 1903
Query 1319 TCAGACACTTTCCTCTGATGAATTTAGGAGAAAACAGTGTTCTTGAAGTTATCTAATGAT 1378
||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1904 TCAAACACTTTCCTCTGAAGAATTTAGGCGAAAACAGTGTTCTTGAAGTTATCTACTGAT 1963
Query 1379 GACGCA 1384
||||||
Sbjct 1964 GACGCA 1969
> AT4G03340.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr4:1467727-1470080
REVERSE LENGTH=2100
Length=2100
Score = 1062 bits (575), Expect = 0.0
Identities = 1125/1383 (81%), Gaps = 67/1383 (5%)
Strand=Plus/Plus
Query 17 GGGAATG-AGAAAATTGTATAGGAAGCTGGTTT-CATTCAGAGACCCTTTTGCTAGGGTG 74
||| ||| || ||| |||||||||||||| ||| | |||||||||| || || || ||
Sbjct 612 GGGGATGAAG-AAAGTGTATAGGAAGCTGATTTGGA-TCAGAGACCCATTAGCGAGATTG 669
Query 75 AAGAGACATGTTAGTTCACACTCAGGGATTAGAG-CTTTCAGCGACAGAAAATGGATGTT 133
|||||||||||||||||||| |||||| |||| | |||||| || ||||||||||||||
Sbjct 670 AAGAGACATGTTAGTTCACATTCAGGGTTTAG-GTTTTTCAGAGATAGAAAATGGATGTT 728
Query 134 CCCTTTTCTAGCAAGCTTGATCATGTCGATTACTCTCCTGAT-TTTGTTAATCTCTGGCC 192
||||||| ||||||||||| | ||||| ||||||| |||| | || | | | || ||
Sbjct 729 CCCTTTTTTAGCAAGCTTGGTTTTGTCGGTTACTCTTTTGATGTCTG-TCCTTTATGTCC 787
Query 193 AATTCGACGGCTTC-TATGGGGAAGAAGATCAATTACCATTAGATGTTGTTTCAG-AG-- 248
|| |||| | |||| |||| ||||| || | ||| || || ||| | | |||| ||
Sbjct 788 AACTCGA-GACTTCTTATGTGGAAG-AG--CCATTGCCTTTTGATAATCTCTCAGAAGAA 843
Query 249 TCTAATGAGTACTTTGTAGAATCAGATTTCA-AACAATCTTTGAATTCGACGGCT-GA-T 305
| ||||| ||||||||||||||| | || | || |||||||||||||| | | || |
Sbjct 844 ACAAATGATTACTTTGTAGAATCACAATTGAGAA-TGTCTTTGAATTCGAC-GTTGGATT 901
Query 306 -G--TTAATTTAG-GGCCTCCTAGGTTAGCTTATTTGATATCGGGAACAAAAGGCGATAG 361
| || || || || ||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 902 CGACTT-CTTCAGAGG-TTCCTAGGTTAGCTTATTTGATCTCGGGGACGAAAGGTGATAG 959
Query 362 TCATAGGATGATGAGGACTTTACAAGCTGTGTACCATCCTAGAAACCAATATGTTCTGCA 421
|| |||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||
Sbjct 960 TCTTAGGATGATGAGGACTTTGCAAGCTGTGTATCATCCAAGAAATCAGTATGTTCTGCA 1019
Query 422 TTTGGATCTTGAGGCTCCACCT-CGTGAACGGATGGAGCTGGCGATGTCCGTGAAGAGTG 480
|||||||||||| ||||| ||| | ||| || | ||||| || ||||| ||||||||||
Sbjct 1020 TTTGGATCTTGAAGCTCCTCCTAAG-GAAAGGCTTGAGCTTGCAATGTCTGTGAAGAGTG 1078
Query 481 ATCCGACTTTCCGTGAAATGGAGAATGTTCGTGTGATGTCTCAGTCTAATCTT-GTTACT 539
||| |||||||||||| | ||||| |||||||| ||||||||||||||| || ||||||
Sbjct 1079 ATCAAACTTTCCGTGAAGTTGAGAACGTTCGTGTTATGTCTCAGTCTAAT-TTGGTTACT 1137
Query 540 TATAAAGGCCCTACAATGATTGCGTGTACTCTTCAAGCCGTTGCAATTTTGCTGAGGGAA 599
||||||||||||||||||||||| || || ||||| ||||| || |||||||| | |||
Sbjct 1138 TATAAAGGCCCTACAATGATTGCTTGCACGCTTCAGGCCGTGGCGATTTTGCTTAAAGAA 1197
Query 600 AGCTTACATTGGGATTGGTTTCTT-AACCTTAGCGCCTCGGATTATCCTCTAGTAACACA 658
||||| ||||||||||||| | | || ||||| ||||||||||||||||| || |||||
Sbjct 1198 AGCTTGGATTGGGATTGGTT-CATCAATCTTAGTGCCTCGGATTATCCTCTTGTGACACA 1256
Query 659 AGATGATTTGTTGTATGTCTTCT-CAAATCTGTCTCGGAATGTCAATTTCATCGAGA-AT 716
||||||| || ||||||| || | | ||| |||||||||||||||||||||| || | ||
Sbjct 1257 AGATGATATGCTGTATGTGTT-TGCGAATTTGTCTCGGAATGTCAATTTCATTGA-ACAT 1314
Query 717 ATGCAGCTCACCGGATGGAAACTGAATCAGAGGGCTAAATCAATCATTGTTGATCCTGCC 776
||| |||||||||| ||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 1315 ATGAAGCTCACCGGGTGGAAACTGAACCAAAGGGCCAAATCAATCATTGTTGATCCCGGT 1374
Query 777 CTATACCTATCGAAGAAATCCGATATTGCTTGGACTACTCAACGAC-GATCACTTCCAA- 834
|| ||||||||||||||| |||| ||||||||||||||||||| || | |||||||| |
Sbjct 1375 CTTTACCTATCGAAGAAAACCGAAATTGCTTGGACTACTCAAC-ACCGTTCACTTCCCAC 1433
Query 835 ATTCTTTCAAGCTATTCACCGGCTCAGCTTGGATAATGT-TGACTCGGTCTTTCCTCGAG 893
|| |||||| ||| ||||| ||||| || ||| || | | ||||||||||||| || ||
Sbjct 1434 AT-CTTTCACGCTGTTCACAGGCTCGGCGTGGGTAGT-TCTGACTCGGTCTTTTCTTGAA 1491
Query 894 TACTGCA-T-TTGGGGATGGGATAACTTCCCAAGAACAATACTA-ATGTACTACACGAA- 949
|||| || | ||||| |||||| || || || || || || || ||||||||||| ||
Sbjct 1492 TACT-CAATCTTGGG-ATGGGACAATTTTCCGAGGACGAT-CTTGATGTACTACACCAAC 1548
Query 950 TTTCGTGTCCTCTCCTGAAGGATACTTCCATACAGTAATCTGCAACAGCA-AAGAGTTTG 1008
||| || |||||||| ||||||||||| || ||| | || || |||| | |||||||
Sbjct 1549 TTT-GTATCCTCTCCAGAAGGATACTTTCACACACTGATATGTAACA-CTGAAGAGTTCA 1606
Query 1009 TCAACACCGCGATTGGGCATGATCTACACTACATTGCTTGGGAC-AGTCCTCCAAAGCAA 1067
| |||||||||||||||||| || |||||||||||||||||| | |||||||||||||
Sbjct 1607 AGAGCACCGCGATTGGGCATGACCTGCACTACATTGCTTGGGACTA-TCCTCCAAAGCAA 1665
Query 1068 CACCCTAGA-TCTCTCTC-ATTGAAGGATTTCGACAATATGGTCAAAAGCAAAGCTCCAT 1125
||||| | | ||| | || || ||||||||||||||| ||||||||||||||||| ||||
Sbjct 1666 CACCCAA-ACTCTTTATCGAT-GAAGGATTTCGACAAGATGGTCAAAAGCAAAGCCCCAT 1723
Query 1126 TTGCACGCAAGTTCCACAAGAACGATCCTGCGTTAGACAAGATCGATAAAGAGCTATTGG 1185
|||| || |||||||||||||||||||||| |||||||||||||||| |||||| || |
Sbjct 1724 TTGCTCGAAAGTTCCACAAGAACGATCCTGTATTAGACAAGATCGATAGAGAGCTCTTAG 1783
Query 1186 GACGGACACA-CAGATTTTC-TCCAGGAGGATGGTGTATTGGGAGTTCAGCTAATGGCAA 1243
| || || || | | ||||| || ||||| ||||| ||||| || || | ||||||
Sbjct 1784 GCCGCACTCATCGG-TTTTCCTC-AGGAGCTTGGTGCATTGGTAGCTCGGAAAATGGCGC 1841
Query 1244 TGATCCGTGCTCTGTGCAAGGCGACGACTCGG-TGTTGAAACCTGGACCTGGTTCTGCA- 1301
||||||||||||||| | || || ||||| | | |||||||| || |||||| ||| |
Sbjct 1842 TGATCCGTGCTCTGTCCGCGGGGATGACTCTGCT-TTGAAACCAGGCCCTGGTGCTG-AG 1899
Query 1302 AGGTTGCAGGAGCTTGTTCAGACACTTTCCTCTGATGAATTTAGGAGAAAACAGTGTTCT 1361
|| || |||||||| |||||||||||| |||||||| || || | |||||| |||||
Sbjct 1900 AGATTAAAGGAGCTTCTTCAGACACTTTTATCTGATGAGTTCAGAATAAAACAATGTTCA 1959
Query 1362 TGA 1364
|||
Sbjct 1960 TGA 1962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68172340110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5