BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919020
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03540.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2830 0.0
> AT1G03540.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:883782-885611 FORWARD LENGTH=1830
Length=1830
Score = 2830 bits (1532), Expect = 0.0
Identities = 1730/1826 (95%), Gaps = 12/1826 (1%)
Strand=Plus/Plus
Query 32 TCATCCTTAAGCGCCAATTCAGTCGACACGCCTCTCTGTGTCTGACGCCGTCAAATTCTT 91
||||||| |||||||| ||||||| |||||||||| | ||||| |||||||||| |||||
Sbjct 11 TCATCCTGAAGCGCCATTTCAGTCAACACGCCTCTTTATGTCTCACGCCGTCAATTTCTT 70
Query 92 CCTCTGCTCCGACGAAACAATCTCGGATCCTGGAGCTTTGTAAATTGGGTCAGCTCACCG 151
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 71 CCTCTGCTCCGACGAAACAATCCCGGATCCTGGAGCTTTGTAAATTGGGTCAGCTCACCG 130
Query 152 ACGCCATTCGGATCCTAAACTCAACACACTCGTCCGAGATCTCTGCGAA-GTCGAAGCTC 210
| |||||||||||||||||||||||||||||||| |||||| | || || | | |||||
Sbjct 131 AAGCCATTCGGATCCTAAACTCAACACACTCGTCTGAGATCCCCGC-AACGCCAAAGCTT 189
Query 211 TACGCGTCTCTCTTACAAACATGCAGA-AAAGTCTTCTCCTTTATCCACGGCCTTCAGTT 269
|| || |||||||| |||||||||| | |||||||||||||||||||| ||| |||||||
Sbjct 190 TATGCCTCTCTCTTGCAAACATGCA-ACAAAGTCTTCTCCTTTATCCATGGCATTCAGTT 248
Query 270 TCATGCCCATGTCGTCAAATCGGGTCTGGAAACAGACCGGAACGTTGGGAACGGCTTGCT 329
||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||
Sbjct 249 TCATGCCCATGTCGTCAAATCGGGTCTGGAAACGGACCGAAACGTTGGGAACAGCTTGCT 308
Query 330 CTCTCTGTACTTCAAGTTGGGACCTGATATGAGGGAGACTCGGAGAGTTTTCGATGGAAT 389
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 309 CTCTCTGTACTTCAAGTTGGGACCTGGTATGAGGGAGACTCGGAGAGTTTTCGATGGTA- 367
Query 390 G-TTCGTCAAAGACGCGATTTCGTGGACTTCGATGATGTCTGGATACGTTGCCGGTAAAG 448
| |||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 368 GATTCGTCAAAGACGCCATCTCGTGGACTTCGATGATGTCTGGATACGTTACCGGTAAAG 427
Query 449 AACATGTTAAGGCGCTTGAGGTGTTTGTGGAGATGGTGAGTTTTGGTTTGCA-GCCGAAT 507
|||| ||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 428 AACACGTTAAGGCGCTTGAGGTGTTTGTGGAGATGGTGAGTTTTGGTTTGGATG-CGAAT 486
Query 508 GAGTTTACGTTGTCTTCGGCGGTTAAGGCTTGCTTTGAGCTTGGAGAAGTTAGGCTAGGG 567
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 487 GAGTTTACGTTGTCTTCGGCGGTTAAGGCTTGCTCTGAGCTTGGAGAAGTTAGGCTAGGG 546
Query 568 AGGTGTTTCCATGGAGTTGTTATTACTCATGGGTTCGAGTGGAACCATGTTATCTCTAGC 627
|| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 547 AGATGTTTCCATGGTGTTGTTATTACTCATGGGTTCGAGTGGAACCATTTTATCTCTAGC 606
Query 628 ACATTGGCGTATATGTACGGTGTGAATAGAGAACCAGTAGATGCACGCCGGGTGTTTGAT 687
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 607 ACATTGGCGTATTTGTACGGTGTGAATAGAGAACCAGTAGATGCACGCCGAGTGTTCGAC 666
Query 688 GAAATGCCTGAGCCAGATGTTATTTGTTGGACAGCTGTACTCTCTGCGTTTTCGAAGAAC 747
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 667 GAAATGCCTGAGCCAGATGTTATTTGTTGGACAGCTGTGCTTTCTGCGTTTTCTAAGAAC 726
Query 748 GACTTGTACGAGGAAGCTTTGGGGCTTTTTTACGCTATGCACAGAGGAAAAGGGTTGGTG 807
||||||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct 727 GACTTGTACGAGGAAGCTTTGGGACTTTTTTATGCGATGCATAGAGGGAAAGGGTTGGTG 786
Query 808 CCTGATGGGTCTACATTTGGAACGGTTTTAACGGCTTGTGGTAATCTGAGGAGGCTGAAG 867
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 787 CCTGATGGGTCTACATTTGGAACGGTTTTGACTGCTTGTGGTAATCTGAGGAGGCTGAAG 846
Query 868 CAAGGGAAAGAGATTCATGGGAAGCTTATTACAAATGGGATAGGTAGCAATGTGGTGGTC 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 CAAGGGAAAGAGATTCATGGGAAGCTTATTACAAATGGGATAGGTAGCAATGTGGTGGTC 906
Query 928 GAGAGTAGTCTTCTTGATATGTATGGTAAATGTGGATCAGTACGGGAGGCTAGGCAAGTG 987
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 907 GAGAGTAGTCTTCTTGATATGTATGGTAAATGTGGATCCGTACGGGAGGCTAGGCAAGTG 966
Query 988 TTCAATGGGATGTCTAAGAAGAACACCGTATCTTGGTCTGCCTTACTCGGCGGATACTGT 1047
|||||||| ||||||||||| |||| || |||||||||||||||||||| |||||||||
Sbjct 967 TTCAATGGAATGTCTAAGAAAAACAGTGTTTCTTGGTCTGCCTTACTCGGGGGATACTGT 1026
Query 1048 CAGAATGGAGAACATGAGAAAGCAATTGAGATGTTCAGGGAGATGGAAGAGAAAGATCTG 1107
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1027 CAGAATGGAGAGCATGAAAAAGCAATTGAGATTTTCAGGGAGATGGAAGAGAAAGATCTG 1086
Query 1108 TACTGTTTTGGCACTGTTCTTAAGGCGTGTGCTGGTTTGGCGGCAGTAAGACTTGGTAAA 1167
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1087 TACTGTTTCGGCACTGTTCTTAAGGCGTGTGCTGGTTTGGCGGCAGTGAGACTTGGGAAA 1146
Query 1168 GAGATTCATGGCCAGTATGTGAGAAGAGGGTGTTTTGGTAATGTGATTGTAGAATCGGCT 1227
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GAAATTCATGGCCAGTATGTGAGAAGAGGGTGTTTTGGTAATGTGATTGTAGAATCGGCT 1206
Query 1228 TTAATTGACTTGTATGGGAAATCCGGGTGCATTGATTATGCTAGTCGTGTTTACTCCAAG 1287
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1207 TTAATTGACTTGTATGGGAAATCCGGGTGCATTGATTCTGCTAGTCGTGTTTACTCCAAG 1266
Query 1288 ATGTCAGTTAGGAACATGATAACGTGGAACGCAATGCTCTCTGCGCTTGCTCAAAATGGA 1347
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1267 ATGTCAATTAGGAACATGATAACGTGGAACGCAATGCTCTCTGCGCTTGCTCAGAATGGA 1326
Query 1348 AGAGGTGAAGAAGCTGTTAGTTTCTTCAATGATATGGTTAAAAAGGGGATAAAGCCTGAT 1407
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 AGAGGTGAAGAAGCTGTTAGTTTCTTCAATGATATGGTTAAAAAGGGGATAAAGCCTGAC 1386
Query 1408 TACATCAGTTTTATCGCGGTTCTCACTGCATGTGGTCATACAGGG-TTGGTTGAAGAGGG 1466
|||||||||||||| ||| |||| ||||||||||||||||| ||| ||||||| |||||
Sbjct 1387 TACATCAGTTTTATTGCGATTCTTACTGCATGTGGTCATAC-GGGAATGGTTGACGAGGG 1445
Query 1467 ACGGAATTACTTTGCGTTGATGGCTAAGAGTTATGGGATTAAACCAGGTACCGAGCATTA 1526
|||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1446 ACGGAATTACTTTGTGTTGATGGCTAAGAGTTACGGGATTAAACCAGGTACTGAGCATTA 1505
Query 1527 CAGTTGCATGATTGACCTTCTAGGACGCGCAGGTTTGTTTGAAGAAGCGGAGAATCTGTT 1586
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1506 CAGTTGCATGATTGACCTTCTAGGACGTGCAGGTTTGTTTGAAGAAGCGGAGAATCTGTT 1565
Query 1587 GGACAGAGCGGAGTGTAGAAATGATGCATCTCTGTGGGGAGTTCTGCTTGGACCTTGTGC 1646
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1566 GGAGAGAGCAGAGTGTAGAAATGATGCGTCTCTGTGGGGAGTTCTGCTTGGACCTTGTGC 1625
Query 1647 TGCAAATACAGATGCCTCCAGTA-TTGCAGAGCGGATTGCAAAGAGAATGATGGAGTTGG 1705
||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1626 TGCAAATGCAGATGCCTCCAG-AGTTGCAGAGCGGATTGCAAAGAGAATGATGGAGTTGG 1684
Query 1706 AACCAAAGTACCACATGAGTTATGTGCTTCTCAGTAACATGTACAAGGCGATAGGTCGCC 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 AACCAAAGTACCACATGAGTTATGTGCTTCTCAGTAACATGTACAAGGCGATAGGTCGCC 1744
Query 1766 ATGGTGATGCTCTCAAGATTCGTAAGTTAATGGTGAGACGAGGAGTAGCAAAGACTGTTG 1825
|||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1745 ATGGTGATGCACTCAATATTCGTAAGTTAATGGTTAGACGAGGGGTAGCAAAGACTGTTG 1804
Query 1826 GACAGAGCTGGATTGATGCTCATTAG 1851
|||||||||||||||||||||| |||
Sbjct 1805 GACAGAGCTGGATTGATGCTCACTAG 1830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5