BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919028

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G03670.1 | Symbols:  | ankyrin repeat family protein | chr1:...   220    3e-57


> AT1G03670.1 | Symbols:  | ankyrin repeat family protein | chr1:914222-916222 
REVERSE LENGTH=1851
Length=1851

 Score =  220 bits (119),  Expect = 3e-57
 Identities = 131/137 (96%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  1     TAACGGCTATTGTATCAATGATGATGGCATCTGTGGCTGGAATCACTCTTGTGGTGAGCG  60
             |||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct  1607  TAACAGCTGTTGTATCAATGATGATGGCATCTGTGGCTGGACTTACTCTTGTGGTGAGCG  1666

Query  61    ATCTCCCATGGCTTTCCCATCTTGTATTAGCCATAGATTCAGCCTTCTTGGTAATCTTGA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  1667  ATCTCCCATGGCTTTCCCATCTTGTATTAGCCATAGATTCAGCCTTCTTGGTATTCCTGA  1726

Query  121   TGCTACTTATCATTCCT  137
             |||||||||||||||||
Sbjct  1727  TGCTACTTATCATTCCT  1743



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9701675557


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5