BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919034
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04560.1 | Symbols: | transferases, transferring glycosyl g... 311 2e-84
> AT2G04560.1 | Symbols: | transferases, transferring glycosyl
groups | chr2:1590306-1592667 REVERSE LENGTH=1418
Length=1418
Score = 311 bits (168), Expect = 2e-84
Identities = 189/199 (95%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 1 GACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCCGAGAAGTTGATAC 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1202 GACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCTGAGAAGTTGATAC 1261
Query 61 AGCTCTTGCATCCGTCAGAA-GACAGAATGGGCAACTCCATTCATTGCACTGGTTTGGAA 119
|||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 1262 AGCTCTTGCATCCGTCAGAAAG-CAGAATGGGCAACTCAATTCATTGCACTGGTTTGGAA 1320
Query 120 TCTCATCGATATACACCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGTCAAGCAC 179
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1321 TCTCATCGATATACGCCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGCCAGGCGT 1380
Query 180 TAAAAACTCTCGTGAGTCA 198
|||||||| ||||||||||
Sbjct 1381 TAAAAACTATCGTGAGTCA 1399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9003941829
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5