BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919043
Length=277
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03743.1 | Symbols: | snoRNA | chr1:937207-937287 REVERSE L... 145 3e-34
AT1G03746.1 | Symbols: | snoRNA | chr1:937401-937485 REVERSE L... 115 2e-25
> AT1G03743.1 | Symbols: | snoRNA | chr1:937207-937287 REVERSE
LENGTH=81
Length=81
Score = 145 bits (78), Expect = 3e-34
Identities = 81/82 (99%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 9 GATCAGAATATGATGTCATTCTCATACACAGAATCTGTGTCAGAAGGTGTCCTAAGATTT 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GATCAGAATATGATGTCATTCTCATACACAGAATCTGTGTCAGAAGGTGTCCTAAGATTT 22
Query 69 TATCTGATTTCTCATCATTTCT 90
|||||||||||||||||||||
Sbjct 21 -ATCTGATTTCTCATCATTTCT 1
> AT1G03746.1 | Symbols: | snoRNA | chr1:937401-937485 REVERSE
LENGTH=85
Length=85
Score = 115 bits (62), Expect = 2e-25
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 213 AATCAGAAAGAACGTAGCGAGTTGAAATTTTTATCGATCATATGAATCAAAAGACCATCA 272
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 85 AATCAGAAAGAACGTAGCGAGTTGAAATTTTTGTCGATCATATGAATCAAAAGACCATCA 26
Query 273 CCGAT 277
|||||
Sbjct 25 CCGAT 21
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12717740497
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5