BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919050
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03800.1 | Symbols: ERF10, ATERF10 | ERF domain protein 10 |... 688 0.0
> AT1G03800.1 | Symbols: ERF10, ATERF10 | ERF domain protein 10
| chr1:957261-957998 REVERSE LENGTH=738
Length=738
Score = 688 bits (372), Expect = 0.0
Identities = 522/594 (88%), Gaps = 12/594 (2%)
Strand=Plus/Plus
Query 66 AAGAGTAAGGAACTGCGTTACAGGGGTGTAAGGAGGAGACCATGGGGGAGATACGCTGCG 125
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 139 AAGAGTAAGGAAGTGCGTTACAGGGGTGTAAGGAGGAGACCATGGGGGAGATATGCTGCG 198
Query 126 GAGATCCGTGATCCGATAAAGAAAAAACGGGTCTGGCTCGGATCTTTTTACACTGGGGTG 185
||||||||||||||| ||||||||||||||||||||||||| || || |||| |||| |
Sbjct 199 GAGATCCGTGATCCGGTAAAGAAAAAACGGGTCTGGCTCGGGTCCTTCAACACGGGGGAG 258
Query 186 GAAGCCGCCAGAGCCTACGACTCCGCTGCCA-GAGAGTTTC-ACGGAGCCAAAGCAAAAA 243
||||||||||||||||||||||||||||||| || ||||| | ||| | ||||| | |
Sbjct 259 GAAGCCGCCAGAGCCTACGACTCCGCTGCCATAAG-GTTTCGA-GGATCGAAAGCTACTA 316
Query 244 CCAACTTCCGTCTCCTTGGAGAAGATGGAAACGCTTCGGTGACGCCGGTGAACAACGCCC 303
| ||||||| ||| | ||| | |||| | |||||| |||||||||||||||| ||
Sbjct 317 CTAACTTCCCTCTAATCGGATACTATGGGATTTCTTCGGCGACGCCGGTGAACAACAACC 376
Query 304 TTTCTGAAACGGCGCCTGATGGAAATGCCAACTTCCTTCTCGTTGGAGACGATGTGAATG 363
|||| || |||| | |||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 377 TTTCCGAGACGGTGAGTGATGGAAATGCCAACCTCCCTCTCGTTGGAGACGATGGGAATG 436
Query 364 CTTCGGCGATGCT--GGTTAACAACTCCCTTTCTGAAACAGCGTGTGATGGAACACTTCC 421
||| ||| | || ||| |||||| ||||||| ||||| ||| ||||||||||||||||
Sbjct 437 CTTTGGC--TTCTCCGGTGAACAACACCCTTTCCGAAACGGCGCGTGATGGAACACTTCC 494
Query 422 ATTGGATTGTCA-GAACTTGTTGTCTCCGGGGGTGGCTGAAGCGGTTGCTGGATTTTTCT 480
|| ||||||||| | || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 495 ATCGGATTGTCACG-ACATGTTATCTCCGGGGGTGGCTGAAGCGGTTGCTGGATTTTTCT 553
Query 481 TAGATCCGTCC-GATGCTACTGCGTTGAAAGAGGAGCTTGATCGAGTTTGTCCAGACCAG 539
|||||| | || || | || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 554 TAGATCTG-CCTGAAGTTATTGCGTTGAAAGAGGAGCTTGATCGAGTTTGTCCTGACCAG 612
Query 540 TTTGCGTCCATTGATATGGGGTTGAGTATTGGTCCTCAAACTGCCGTGGAAGAGCCTGAG 599
|||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 613 TTTGAGTCCATTGATATGGGGTTGACTATTGGTCCTCAAACCGCCGTGGAAGAGCCTGAG 672
Query 600 ACTTCCTCCGCCGTGGATTGTGAGCTGCGAAAGGAACCGGATCTGGACCTTAAC 653
||||||||||||||||||||| ||||||||| |||||||||||| ||||| |||
Sbjct 673 ACTTCCTCCGCCGTGGATTGTAAGCTGCGAATGGAACCGGATCTTGACCTCAAC 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33204771167
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5