BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919052
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03820.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1024 0.0
> AT1G03820.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1345 Blast
hits to 1122 proteins in 102 species: Archae - 2; Bacteria
- 28; Metazoa - 28; Fungi - 30; Plants - 109; Viruses - 0;
Other Eukaryotes - 1148 (source: NCBI BLink). | chr1:959869-960728
REVERSE LENGTH=860
Length=860
Score = 1024 bits (554), Expect = 0.0
Identities = 667/718 (93%), Gaps = 21/718 (3%)
Strand=Plus/Plus
Query 1 ACAGTATTCTCTCTTCATCGATGGCTTCTTTTGCTCTGAAACCCATTTTTTGTTTCATTG 60
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 33 ACATTATTCTCTCTTCATTGATGGCTTCTTTTGCTCTGAAACCCATTTTTTGTTTCATTG 92
Query 61 CTGTTTTTTGCTTCATTGTTCACAATGTTGAAGCTAGAGAAGGTAAGCTCTTCTTTAGCA 120
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 93 CTGTTTTTTGCTTCATCGTCCACAATGTTGAAGCTAGAGAGGGTAAGCTCTTCTTTAGCA 152
Query 121 AGTTCACTCACTTAGATCGCCCTAACAACAAAGAGGT-GTCTCTAACTCCAGCTCCAGCT 179
||||||||||| ||||||| |||||||||||||| || | ||||| ||||||||||||||
Sbjct 153 AGTTCACTCACATAGATCGTCCTAACAACAAAGATGTCG-CTCTATCTCCAGCTCCAGCT 211
Query 180 CCCGGACTAGCTCAAGCTAATGGAAGACTCGGAGATGGGTCTTTCGGGCCTGGTTCCGGT 239
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 212 CCCGGACTAGCCCAAGCTAATGGAAGACTCGGAAATGGGTCTTTCGGGCCTGGTTCCGGT 271
Query 240 ATGATTCCTCAAACCAAAGAGTCATGGCCG-GTTTCATCTACTACCACGGACGAAGACTT 298
||||||||||||||||||||||||||||| ||| |||| ||||| || |||||||| ||
Sbjct 272 ATGATTCCTCAAACCAAAGAGTCATGGCCAAGTT-CATCCACTACAACAGACGAAGAGTT 330
Query 299 TGAGAAATTGATGGCTACATTTGACGAAGAAAAGAATACTCA-GTTACCCGAGTCATTCG 357
||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 331 TGAGAAATTGATGGCTACATTTGACGAAGAAAAGAATAC-CAAGTTACCCGAGGCATTCG 389
Query 358 AGGAAGAAGAAGAGTCCGAAGATTCGGAAGATCTCAATGAGCAAAAGGATAAGTATAACA 417
||||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 390 AGGAAGAAGAAGAATCTGAAGATTCGGAAGATCTCAATGAGCCAAAGGATAAGTACAACA 449
Query 418 ACGA---------TAATGGAAACACTTACACTACTAATAACAACTATAATGACAATGGGA 468
|| | ||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct 450 ACAACAACAACAATAATGGATACACTTACACTACTAA---CAATTATAATGACAATGGGA 506
Query 469 GAGGTTACGGTAATGACGAAGAGAAGCAAGGGATGAGTGACACAAGGTTTATGGAGAACG 528
|||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 507 GAGGTTACGGTAATGAAGAAGAGAAGCAGGGGATGAGTGACACAAGGGTTATGGAGAACG 566
Query 529 GTAAGTATTTCTACGACACAAGAGGTAGGAATTCAGAAAACACCCCTGCTAGTCGCGGGT 588
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 567 GTAAGTATTTCTACGACACAAGAGGTAGGAATTCAGAAAACACCCCT---AGTCGCGGGT 623
Query 589 ATGAGAATGCTCGAGGAAATGATCATCCCAACGAGTTTGAAACTATGGAGGAATACTACA 648
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 624 ATGAGAATGCTCGAGGAAATGATCATACCAACGAGTTTGAAACTATGGAGGAATACTACA 683
Query 649 AGAGCTTGGAGGGTAGTCAAGAAGAGTATGAGCCTTAGAAAGAAATGGTATTTGAGAA 706
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 684 AGAGCTTGGAGGGTAGTCAAGAAGAGTATGAGCCTTAGAAGGAAATTGTATTTGAGAA 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34209454107
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5