BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919055

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G03670.1 | Symbols:  | ankyrin repeat family protein | chr1:...   339    1e-92


> AT1G03670.1 | Symbols:  | ankyrin repeat family protein | chr1:914222-916222 
REVERSE LENGTH=1851
Length=1851

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 226/247 (91%), Gaps = 2/247 (1%)
 Strand=Plus/Plus

Query  3     TTAACGGCTATTGTTTCTATGACAG-TGGCATCTGTGGCTGGAATTACTCTTGTGATGAG  61
             ||||| ||| |||| || ||||  | ||||||||||||||||| ||||||||||| ||||
Sbjct  1606  TTAACAGCTGTTGTATCAATGA-TGATGGCATCTGTGGCTGGACTTACTCTTGTGGTGAG  1664

Query  62    CGATCTCCCATGGCTTTCCCATCTTGTATTAGCCATTGATTCAGCCTTCTTGGTAGTCCT  121
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct  1665  CGATCTCCCATGGCTTTCCCATCTTGTATTAGCCATAGATTCAGCCTTCTTGGTATTCCT  1724

Query  122   GATGCTACTTATCATTCCTTATGCTTTCTCGTCTACAAGGCAAGGTTTTCTCAGACACAT  181
             ||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| ||
Sbjct  1725  GATGCTACTTATCATTCCTTACGCTTTCTCGTCTACAAGACATGGCTTTCTCAGACATAT  1784

Query  182   CTTCTACTTTCCTCATTTCTTGATGCTTTTGGTGGTTAACGAAGACAGTAACAACATGGA  241
             ||||||||||||| ||||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct  1785  CTTCTACTTTCCTTATTTCTTGATGCTTTTGGTTGTTAGCGAAGGCAGCAACAACATGGA  1844

Query  242   TGGTTAA  248
             |||||||
Sbjct  1845  TGGTTAA  1851



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12265330756


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5