BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919069
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03490.1 | Symbols: ANAC006, NAC006 | NAC domain containing ... 353 2e-96
> AT1G03490.1 | Symbols: ANAC006, NAC006 | NAC domain containing
protein 6 | chr1:871874-872906 FORWARD LENGTH=846
Length=846
Score = 353 bits (191), Expect = 2e-96
Identities = 295/342 (86%), Gaps = 19/342 (6%)
Strand=Plus/Plus
Query 27 ATGAAGTCTT-TTCCGGTTGGATCACGGTTTCT-TCCTAAAGATCTAGGTTTGGTGAGGT 84
|||||| || |||||||||||||||||||| | ||| | |||||||| |||||||||
Sbjct 1 ATGAAG-ATTCTTCCGGTTGGATCACGGTTT-TGTCCGACGGATCTAGGGTTGGTGAGGC 58
Query 85 TTTATCTTCGAAACATGGTGGAGAGGAAGCAGAGCAGTTTCATAACAACTATGGACGTCT 144
||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 59 TTTATCTTCGAAACAAGGTGGAGAGAAATCAGAGCAGTTTCATAACAACTATGGACATCC 118
Query 145 A-CATGGACGAGCCGTGGCTTCTTCCTCACGTAAACAATCCTCTGTTCAAGAACAAGGAG 203
| || ||| | || ||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 119 ACCA-AGACTACCCTTGGCTTCTTCCTCACGTAAACAATCCTTTGTTCAATAACAACGAG 177
Query 204 TGGTACTACTTTGTTCAGCTGACTAAACGA-----C--G-T-TCAAGCGTGCAACGGAAG 254
|||||||||||||||| ||| ||| ||||| | | | | |||||| || ||||||
Sbjct 178 TGGTACTACTTTGTTCCGCTTACTGAACGAGGTGGCAAGATATTAAGCGTACACCGGAAG 237
Query 255 GTACCCGGAAGAGGAGGAAGCGAAGGCGGCACTTGGAGAAGCAACGATGGGAAAGAAGAG 314
||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 GTAGCCGCAAGAGGAGGAAGCGAAGGCGGCACTTGGAGAAGCAACGATGGGAAAAAAGAG 297
Query 315 ATCAAGGACGGACA--T-CAAA-GGGTGATGGGTTACCAGCA 352
|||||||||||||| | |||| |||||||||||||| ||||
Sbjct 298 ATCAAGGACGGACACATGCAAAAGGGTGATGGGTTACGAGCA 339
Score = 209 bits (113), Expect = 4e-53
Identities = 185/219 (84%), Gaps = 7/219 (3%)
Strand=Plus/Plus
Query 583 AGGCTGATTTAACCGGTTTAACTGATGAGCTTGAGAAGATGCCAGAGGGACAAGAAGATC 642
||| || |||||||||||| ||||| ||||||||| ||||| ||||||||||||||| |
Sbjct 440 AGGATGCTTTAACCGGTTTTGCTGATCAGCTTGAGATGATGCTAGAGGGACAAGAAGACC 499
Query 643 GTGAGGAGCAAGAAGAGGTTGACTTAACCGATTTTCCTGATGAG-CTTGAGACGATGCTA 701
||||| || ||||||||| ||| ||||||| |||| ||||| || |||||||||||||||
Sbjct 500 GTGAGCAGAAAGAAGAGGCTGATTTAACCGGTTTTGCTGAT-AGCCTTGAGACGATGCTA 558
Query 702 GAGGGACAAGAAGATTGTGAGCAACAACAAGAGGCTGAGTTAACCGGTTTTTCTGATGAC 761
||||||||||||||| |||||| | | |||| ||||| |||||||||||| ||||| |
Sbjct 559 GAGGGACAAGAAGATCATGAGCAGCCAGAAGATGCTGATTTAACCGGTTTTGCTGAT-AG 617
Query 762 CCT-GAGTCGATGTTGCTAGATGGAGAAGAAGATCGTGA 799
||| ||| ||||| ||||| ||| | |||||||||||
Sbjct 618 CCTTGAGACGATG---CTAGAGGGACATGAAGATCGTGA 653
Score = 132 bits (71), Expect = 9e-30
Identities = 90/99 (91%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 1018 AGCAAGAAGATGATGATATGATGGTGCTGATGGACAATCCTAATGATGCCCTCGCATTGG 1077
|||||||| | |||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 746 AGCAAGAAAAAGATGATGTGATGGTACTGATAAACAATCCTAATGATGCCCTCGCATTGG 805
Query 1078 GGAATTATGAGTTTATT-ATCTAACTAGGGTTGATGAAA 1115
||||||||||| ||||| ||||||||||||||||| |||
Sbjct 806 GGAATTATGAGATTATTGATCTAACTAGGGTTGAT-AAA 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5