BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg919070
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associ... 1103 0.0
> AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associated
protein 2.3 | chr1:1011172-1013365 REVERSE LENGTH=1002
Length=1002
Score = 1103 bits (597), Expect = 0.0
Identities = 647/672 (96%), Gaps = 0/672 (0%)
Strand=Plus/Plus
Query 2 ACAAGCAAGGGGAAGAAACATGAACATCTTCACTAAGAAACCAAATCCGAGAGAAGTGCT 61
|||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 135 ACAAGCAAGGAGAAGAAACATGAACATCTTCACTAAGAAACCTAATCCCAGAGAAGTGCT 194
Query 62 TAGGGAGAGTAAGAGAGAAATGACACAAGCTACAAGAGGAATCGAAAAGGAAATCGGATC 121
| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 195 TCGGGAGAGTAAGAGAGAGATGACACAAGCTACCAGAGGAATCGAAAAGGAAATCGGATC 254
Query 122 TCTGCAATCAGAAGAGAAAAAGCTTGTTCTCGAGATTAAAAGAACTGCTAAAACAGGGAA 181
||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||| ||
Sbjct 255 TCTGCAATCAGAAGAAAAAAAGCTCGTTCTCGAGATCAAAAGAACTGCTAAATCAGGCAA 314
Query 182 TGAGGGAGCAACTAAGATTCTTGCTCGGCAATTGATCCGGCTAAGGCAGCAAATAGCTAA 241
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 315 TGAGGGAGCGACTAAGATTCTTGCTCGGCAATTGATCCGTCTAAGGCAGCAAATAGCTAA 374
Query 242 CTTACAAGGTAGCCGAGCTCAAATGCGAGGCATAGCTACTCATACACAGGCTATGCATGC 301
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 375 CTTACAAGGTAGCCGAGCTCAAATGCGAGGCATTGCTACTCATACACAGGCTATGCATGC 434
Query 302 GCACACTTCAGTTGCTGCTGGAATGCAAGGTGCCACTAAGGCAATGGCAGCTATGAGCAA 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 ACACACTTCAGTTGCTGCTGGAATGCAAGGTGCCACTAAGGCAATGGCAGCTATGAGCAA 494
Query 362 GAATATGGATCCAGCAAAACAGGCTAAGGTTATGAGAGAATTTCAAAAGCAGTCTGCACA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 GAATATGGATCCAGCAAAACAGGCTAAGGTTATGAGAGAATTTCAAAAGCAGTCTGCACA 554
Query 422 AATGGACATGACTACTGAGATGATGTCAGATGCCATAGATGATGCTTTAGATAATGACGA 481
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 555 AATGGACATGACTACTGAGATGATGTCAGATTCCATAGATGATGCTTTAGACAATGACGA 614
Query 482 AGCTGAGGATGAAACAGAGGATTTGACAAACCAGGTTCTTGATGAAATCGGCATTGATAT 541
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AGCTGAAGACGAAACAGAGGATTTGACAAACCAGGTTCTTGATGAAATCGGCATTGATAT 674
Query 542 CGCCTCGCAGTTATCATCTGCTCCAAAAGGTAAAATTGGTGGGAAGAATGCAGAGAATGT 601
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 675 CGCCTCGCAGTTATCATCTGCTCCAAAAGGGAAAATTGGTGGGAAGAAAGCAGAGGATGT 734
Query 602 TGGCAGTTCTGAAATCGATGAACTGGAGAAGCGGTTGGCGGCGCTTAGATAGAAAGAAGA 661
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TGGCAGTTCTGGAATCGATGAACTGGAGAAGCGGTTGGCGGCGCTTAGATAGAAAGAAGA 794
Query 662 AGTGCCGTGAGC 673
||| || |||||
Sbjct 795 AGTACCATGAGC 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32551727256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5