BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg919082

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G04070.1 | Symbols: TOM22-I, ATTOM22-I | translocase of oute...   457    4e-128


> AT1G04070.1 | Symbols: TOM22-I, ATTOM22-I | translocase of outer 
membrane 22-I | chr1:1050553-1051186 REVERSE LENGTH=634
Length=634

 Score =  457 bits (247),  Expect = 4e-128
 Identities = 292/314 (93%), Gaps = 2/314 (1%)
 Strand=Plus/Plus

Query  21   TTCAATCAATGGCGCCTAAGAAAATCGGAGCCGGCGGGA-GAGATTCGAGCATCTTGGCG  79
            |||||||||||||||||||||||||||||||||||   | | ||||||||||||||||||
Sbjct  63   TTCAATCAATGGCGCCTAAGAAAATCGGAGCCGGC-AAAGGCGATTCGAGCATCTTGGCG  121

Query  80   AAGATTTCAAACTACGAAATCGTTTCTCAGGGAAGACGCGCCGCTTGCGATGCTGTCCAC  139
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct  122  AAGATTTCAAACTACGATATCGTTTCTCAGGGAAGACGCGCCGCTTGCGATGCCGTCTAC  181

Query  140  GTGTCGAAGAAGCTGTTAAAGAGCACCGGGAAGGCGGCGTGGATCGCCGGTACGACGTTG  199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  182  GTGTCGAAGAAGCTGTTAAAGAGCACCGGGAAGGCGGCGTGGATCGCCGGTACGACGTTT  241

Query  200  CTCATCCTTGTCGTCCCTTTGATCTTAGAGTTGGAGAAAGATCAGCAATCAAGCGAGTTT  259
            |||||||||| ||| ||||||||||||||||||||| ||||||| | || | ||||| | 
Sbjct  242  CTCATCCTTGCCGTGCCTTTGATCTTAGAGTTGGAGCAAGATCATCGATTAGGCGAGATA  301

Query  260  GAGTTTCAGCAGGCGAGTCTTCTCGGAACCCCACCGGTCGGTGCGATGCACTAAAGTAAC  319
            || ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  302  GATTTTGAGCAGGCGAGTCTTCTCGGAACCCCACCGGTCGGTGCGATGCTCTAAAGTAAC  361

Query  320  TGTAGAAACCCTAA  333
            | ||||||||||||
Sbjct  362  TTTAGAAACCCTAA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5